Radixin (RDX)

The protein contains 583 amino acids for an estimated molecular weight of 68564 Da.

 

Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membrane. (updated: March 4, 2015)

Protein identification was indicated in the following studies:

  1. Goodman and co-workers. (2013) The proteomics and interactomics of human erythrocytes. Exp Biol Med (Maywood) 238(5), 509-518.
  2. Lange and co-workers. (2014) Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome. J Proteome Res. 13(4), 2028-2044.
  3. Hegedűs and co-workers. (2015) Inconsistencies in the red blood cell membrane proteome analysis: generation of a database for research and diagnostic applications. Database (Oxford) 1-8.
  4. Wilson and co-workers. (2016) Comparison of the Proteome of Adult and Cord Erythroid Cells, and Changes in the Proteome Following Reticulocyte Maturation. Mol Cell Proteomics. 15(6), 1938-1946.
  5. Bryk and co-workers. (2017) Quantitative Analysis of Human Red Blood Cell Proteome. J Proteome Res. 16(8), 2752-2761.
  6. D'Alessandro and co-workers. (2017) Red blood cell proteomics update: is there more to discover? Blood Transfus. 15(2), 182-187.
  7. Chu and co-workers. (2018) Quantitative mass spectrometry of human reticulocytes reveal proteome-wide modifications during maturation. Br J Haematol. 180(1), 118-133.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

This protein is annotated as membranous in Gene Ontology, is annotated as membranous in UniProt.


Interpro domains
Total structural coverage: 98%
Model score: 0
No model available.

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VariantDescription
dbSNP:rs17854427
dbSNP:rs34471100
DFNB24

The reference OMIM entry for this protein is 179410

Radixin; rdx

CLONING

Radixin is a cytoskeletal protein that may be important in linking actin to the plasma membrane. Cloning of the murine and porcine radixin cDNAs demonstrated a protein highly homologous to ezrin (123900) and moesin (309845). Wilgenbus et al. (1993) cloned and sequenced the human radixin cDNA and found the predicted amino acid sequence for the human protein to be nearly identical to those predicted for radixin in the two other species. By immunocytochemical analysis of isolated inner ear hair cells, Pataky et al. (2004) demonstrated that radixin is expressed at the base of hair bundles in chicken, frog, mouse, and zebrafish. Electron microscopic analysis found labeling in the stereociliary taper and the lower stereociliary shaft, with progressively less labeling toward the top of the hair bundle. Pataky et al. (2004) concluded that radixin may participate in anchoring the 'pointed' ends of actin filaments to the membrane in stereocilia. Khan et al. (2007) identified 6 alternatively spliced RDX isoforms in human retina and inner eye. The major full-length protein contains 627 amino acids forming 3 known functional domains: an N-terminal FERM domain that localizes the protein to the plasma membrane, a central helical alpha-domain, and a C-terminal actin-binding domain. By immunohistochemical analysis of mouse inner ear, Khan et al. (2007) confirmed the localization of radixin along the length of cochlear hair cell stereocilia and in hair cells of the crista ampullaris at postnatal day 30.

GENE FUNCTION

Using antigen-activated T cells, Faure et al. (2004) showed that the ezrin-radixin-moesin (ERM) proteins are rapidly inactivated through a VAV1 (164875)-RAC1 (602048) pathway. The resulting disanchoring of the cortical actin cytoskeleton from the plasma membrane decreased cellular rigidity, leading to more efficient T cell-APC (antigen-presenting cell) conjugate formation. The authors concluded that this pathway favors immunologic synapse formation and the development of an effective immune response.

MAPPING

Wilgenbus et al. (1993) used PCR of Chinese hamster/human somatic cell hybrid DNAs, as well as standard Southern analysis of somatic cell hybrids, to assign the RDX gene to 11q. By fluorescence in situ hybridization, they further localized the gene to 11q23. - Pseudogenes Wilgenbus et al. (1993) assigned a truncated version of the RDX gene representing a pseudogene (RDXP2) was assigned to Xp21.3. Another pseudogene that seemed to lack introns (RDXP1) was mapped to 11p by Southern and PCR analyses.

MOLECULAR GENETICS

Khan et al. (2007) identified 3 respective pathogenic mutations in the RDX gene (179410.0001-179410.0003) in affected members of 3 Pakistani families with autosomal recessive deafness-24 (DFNB24; 611022). The mutations were predicted to disrupt or delete the actin-binding domain of the protein. None of the affected individuals had vestibular dysfunction or hyperbilirubinemia.

ANIMAL MODEL

The ERM family of proteins crosslink actin filaments and integral membrane proteins. Radixin is the dominant ERM protein in the liver of wildtype mice and is concentrated at bile canalicular membranes (BCM). Kikuchi et al. (2002) showed that Rdx -/- mice are normal at birth, but their serum concentrations of conjugated bilirubin begin to increase gradually around 4 weeks of age, and they show mild liver injury after 8 weeks. This phenotype is similar to human conjugated hyperbili ... More on the omim web site

Subscribe to this protein entry history

Feb. 2, 2018: Protein entry updated
Automatic update: Uniprot description updated

Dec. 19, 2017: Protein entry updated
Automatic update: Uniprot description updated

March 16, 2016: Protein entry updated
Automatic update: OMIM entry 179410 was added.