Presentation

Welcome to the website of the DSIMB bioinformatic group. We are part of the “red blood cell integrated biology” (Inserm UMR-S 1134 and Université Paris Diderot – Paris 7) lab, located at the French national institute of blood transfusion (INTS).



Latest publications from DSIMB


2021

Articles

  • 1 – 2021 ; Floch, A. ; Téletchéa, S. ; Tournamille, C. ; de Brevern, A. G. ; Pirenne, F.
    A Review of the Literature Organized Into a New Database: RHeference
    TRANSFUS MED REV ; [google scholar] 

  • 2 – 2021 ; Vander Meersche, Y. ; Cretin, G. ; de Brevern, A. G. ; Gelly, J. C. ; Galochkina, T.
    MEDUSA: Prediction of Protein Flexibility from Sequence
    J MOL BIOL ; 433 ; (11) 166882 ; [google scholar] 

  • 3 – 2021 ; Buks, R. ; Brusson, M. ; Cochet, S. ; Galochkina, T. ; Cassinat, B. ; Nemazanyy, I. ; Peyrard, T. ; Kiladjian, J. J. ; de Brevern, A. G. ; Azouzi, S. ; El Nemer, W.
    ABCG2 Is Overexpressed on Red Blood Cells in Ph-Negative Myeloproliferative Neoplasms and Potentiates Ruxolitinib-Induced Apoptosis
    INT J MOL SCI ; 22 ; (7) [google scholar] 

  • 4 – 2021 ; Ravikumar, A. ; de Brevern, A. G. ; Srinivasan, N.
    Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility
    J PHYS CHEM B ; 125 ; (10) 2597–2606 ; [google scholar] 

  • 5 – 2021 ; Floch, A. ; Pirenne, F. ; Barrault, A. ; Chami, B. ; Toly-Ndour, C. ; Tournamille, C. ; de Brevern, A. G.
    Insights into anti-D formation in carriers of RhD variants through studies of 3D intraprotein interactions
    TRANSFUSION ; 61 ; (4) 1286–1301 ; [google scholar] 

  • 6 – 2021 ; El Jahrani, N. ; Cretin, G. ; de Brevern, A. G.
    CALR-ETdb, the database of calreticulin variants diversity in essential thrombocythemia
    PLATELETS ; 1–11 ; [google scholar] 

  • 7 – 2021 ; Tandon, H. ; de Brevern, A. G. ; Srinivasan, N.
    Transient association between proteins elicits alteration of dynamics at sites far away from interfaces
    STRUCTURE ; 29 ; (4) 371–384 ; [google scholar] 

  • 8 – 2021 ; Poveda-Cuevas, S. A. ; Barroso da Silva, F. L. ; Etchebest, C.
    How the Strain Origin of Zika Virus NS1 Protein Impacts Its Dynamics and Implications to Their Differential Virulence
    J CHEM INF MODEL ; 61 ; (3) 1516–1530 ; [google scholar] 

  • 9 – 2021 ; Fogha, J. ; Bayry, J. ; Diharce, J. ; de Brevern, A. G.
    Structural and evolutionary exploration of the IL-3 family and its alpha subunit receptors
    AMINO ACIDS ; [pmid:34196789] [doi: 10.1007/s00726-021-03026-3] [google scholar] 

  • 10 – 2021 ; Cretin, Gabriel; Galochkina, Tatiana; de Brevern, Alexandre G.; Gelly, Jean-Christophe
    PYTHIA: Deep Learning Approach for Local Protein Conformation Prediction
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES ; 22 ; (16, ARTICLE-NUMBER = 8831) [doi:10.3390/ijms22168831] [google scholar] 





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