Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-297]:
1a6q0_PU0_1-297
CI=5.30


[298-363 ]:
1a6q0_PU0_298-363
CI=0.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-162]:
1a6q0_PU1_1-162
CI=3.94


[163-216]:
1a6q0_PU1_163-216
CI=3.62


[217-297]:
1a6q0_PU1_217-297
CI=2.85


[298-363 ]:
1a6q0_PU1_298-363
CI=0.89


Level 2
PU
Molecule needs Java 1.4 Structure


[1-72]:
1a6q0_PU2_1-72
CI=3.60


[73-121]:
1a6q0_PU2_73-121
CI=2.06


[122-162]:
1a6q0_PU2_122-162
CI=2.85


[163-216]:
1a6q0_PU2_163-216
CI=3.62


[217-297]:
1a6q0_PU2_217-297
CI=2.85


[298-363 ]:
1a6q0_PU2_298-363
CI=0.89


Level 3
PU
Molecule needs Java 1.4 Structure


[1-35]:
1a6q0_PU3_1-35
CI=2.90


[36-72]:
1a6q0_PU3_36-72
CI=3.46


[73-121]:
1a6q0_PU3_73-121
CI=2.06


[122-162]:
1a6q0_PU3_122-162
CI=2.85


[163-216]:
1a6q0_PU3_163-216
CI=3.62


[217-297]:
1a6q0_PU3_217-297
CI=2.85


[298-363 ]:
1a6q0_PU3_298-363
CI=0.89


Level 4
PU
Molecule needs Java 1.4 Structure


[1-35]:
1a6q0_PU4_1-35
CI=2.90


[36-72]:
1a6q0_PU4_36-72
CI=3.46


[73-104]:
1a6q0_PU4_73-104
CI=2.59


[105-121]:
1a6q0_PU4_105-121
CI=0.21


[122-162]:
1a6q0_PU4_122-162
CI=2.85


[163-216]:
1a6q0_PU4_163-216
CI=3.62


[217-297]:
1a6q0_PU4_217-297
CI=2.85


[298-363 ]:
1a6q0_PU4_298-363
CI=0.89


Level 5
PU
Molecule needs Java 1.4 Structure


[1-35]:
1a6q0_PU5_1-35
CI=2.90


[36-72]:
1a6q0_PU5_36-72
CI=3.46


[73-104]:
1a6q0_PU5_73-104
CI=2.59


[105-121]:
1a6q0_PU5_105-121
CI=0.21


[122-162]:
1a6q0_PU5_122-162
CI=2.85


[163-193]:
1a6q0_PU5_163-193
CI=2.74


[194-216]:
1a6q0_PU5_194-216
CI=2.69


[217-297]:
1a6q0_PU5_217-297
CI=2.85


[298-363 ]:
1a6q0_PU5_298-363
CI=0.89


Level 6
PU
Molecule needs Java 1.4 Structure


[1-35]:
1a6q0_PU6_1-35
CI=2.90


[36-72]:
1a6q0_PU6_36-72
CI=3.46


[73-104]:
1a6q0_PU6_73-104
CI=2.59


[105-121]:
1a6q0_PU6_105-121
CI=0.21


[122-162]:
1a6q0_PU6_122-162
CI=2.85


[163-193]:
1a6q0_PU6_163-193
CI=2.74


[194-216]:
1a6q0_PU6_194-216
CI=2.69


[217-297]:
1a6q0_PU6_217-297
CI=2.85


[298-314]:
1a6q0_PU6_298-314
CI=0.00


[315-363 ]:
1a6q0_PU6_315-363
CI=0.77


Level 7
PU
Molecule needs Java 1.4 Structure


[1-35]:
1a6q0_PU7_1-35
CI=2.90


[36-72]:
1a6q0_PU7_36-72
CI=3.46


[73-104]:
1a6q0_PU7_73-104
CI=2.59


[105-121]:
1a6q0_PU7_105-121
CI=0.21


[122-162]:
1a6q0_PU7_122-162
CI=2.85


[163-193]:
1a6q0_PU7_163-193
CI=2.74


[194-216]:
1a6q0_PU7_194-216
CI=2.69


[217-297]:
1a6q0_PU7_217-297
CI=2.85


[298-314]:
1a6q0_PU7_298-314
CI=0.00


[315-337]:
1a6q0_PU7_315-337
CI=0.24


[338-363 ]:
1a6q0_PU7_338-363
CI=0.36


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-35]:
1a6q0_PU_1-35
CI=2.90


[36-72]:
1a6q0_PU_36-72
CI=3.46


[73-104]:
1a6q0_PU_73-104
CI=2.59


[105-121]:
1a6q0_PU_105-121
CI=0.21


[122-162]:
1a6q0_PU_122-162
CI=2.85


[163-193]:
1a6q0_PU_163-193
CI=2.74


[194-216]:
1a6q0_PU_194-216
CI=2.69


[217-236]:
1a6q0_PU_217-236
CI=0.00


[237-288]:
1a6q0_PU_237-288
CI=2.30


[289-297]:
1a6q0_PU_289-297
CI=0.00


[298-314]:
1a6q0_PU_298-314
CI=0.00


[315-337]:
1a6q0_PU_315-337
CI=0.24


[338-363 ]:
1a6q0_PU_338-363
CI=0.36