Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-110]:
1b65a_PU0_1-110
CI=2.40


[111-130]:
1b65a_PU0_111-130
CI=0.47


[131-363 ]:
1b65a_PU0_131-363
CI=3.96


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU1_1-19
CI=0.19


[20-110]:
1b65a_PU1_20-110
CI=2.80


[111-130]:
1b65a_PU1_111-130
CI=0.47


[131-363 ]:
1b65a_PU1_131-363
CI=3.96


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU2_1-19
CI=0.19


[20-110]:
1b65a_PU2_20-110
CI=2.80


[111-130]:
1b65a_PU2_111-130
CI=0.47


[131-149]:
1b65a_PU2_131-149
CI=0.10


[150-165]:
1b65a_PU2_150-165
CI=0.00


[166-363 ]:
1b65a_PU2_166-363
CI=4.35


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU3_1-19
CI=0.19


[20-110]:
1b65a_PU3_20-110
CI=2.80


[111-130]:
1b65a_PU3_111-130
CI=0.47


[131-149]:
1b65a_PU3_131-149
CI=0.10


[150-165]:
1b65a_PU3_150-165
CI=0.00


[166-286]:
1b65a_PU3_166-286
CI=4.15


[287-302]:
1b65a_PU3_287-302
CI=0.34


[303-363 ]:
1b65a_PU3_303-363
CI=0.88


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU4_1-19
CI=0.19


[20-110]:
1b65a_PU4_20-110
CI=2.80


[111-130]:
1b65a_PU4_111-130
CI=0.47


[131-149]:
1b65a_PU4_131-149
CI=0.10


[150-165]:
1b65a_PU4_150-165
CI=0.00


[166-286]:
1b65a_PU4_166-286
CI=4.15


[287-302]:
1b65a_PU4_287-302
CI=0.34


[303-347]:
1b65a_PU4_303-347
CI=0.90


[348-363 ]:
1b65a_PU4_348-363
CI=0.68


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU5_1-19
CI=0.19


[20-110]:
1b65a_PU5_20-110
CI=2.80


[111-130]:
1b65a_PU5_111-130
CI=0.47


[131-149]:
1b65a_PU5_131-149
CI=0.10


[150-165]:
1b65a_PU5_150-165
CI=0.00


[166-286]:
1b65a_PU5_166-286
CI=4.15


[287-302]:
1b65a_PU5_287-302
CI=0.34


[303-331]:
1b65a_PU5_303-331
CI=0.00


[332-347]:
1b65a_PU5_332-347
CI=1.75


[348-363 ]:
1b65a_PU5_348-363
CI=0.68


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU6_1-19
CI=0.19


[20-64]:
1b65a_PU6_20-64
CI=2.82


[65-92]:
1b65a_PU6_65-92
CI=1.68


[93-110]:
1b65a_PU6_93-110
CI=0.49


[111-130]:
1b65a_PU6_111-130
CI=0.47


[131-149]:
1b65a_PU6_131-149
CI=0.10


[150-165]:
1b65a_PU6_150-165
CI=0.00


[166-286]:
1b65a_PU6_166-286
CI=4.15


[287-302]:
1b65a_PU6_287-302
CI=0.34


[303-331]:
1b65a_PU6_303-331
CI=0.00


[332-347]:
1b65a_PU6_332-347
CI=1.75


[348-363 ]:
1b65a_PU6_348-363
CI=0.68


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU7_1-19
CI=0.19


[20-64]:
1b65a_PU7_20-64
CI=2.82


[65-92]:
1b65a_PU7_65-92
CI=1.68


[93-110]:
1b65a_PU7_93-110
CI=0.49


[111-130]:
1b65a_PU7_111-130
CI=0.47


[131-149]:
1b65a_PU7_131-149
CI=0.10


[150-165]:
1b65a_PU7_150-165
CI=0.00


[166-212]:
1b65a_PU7_166-212
CI=3.88


[213-237]:
1b65a_PU7_213-237
CI=1.20


[238-286]:
1b65a_PU7_238-286
CI=2.57


[287-302]:
1b65a_PU7_287-302
CI=0.34


[303-331]:
1b65a_PU7_303-331
CI=0.00


[332-347]:
1b65a_PU7_332-347
CI=1.75


[348-363 ]:
1b65a_PU7_348-363
CI=0.68


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU8_1-19
CI=0.19


[20-64]:
1b65a_PU8_20-64
CI=2.82


[65-92]:
1b65a_PU8_65-92
CI=1.68


[93-110]:
1b65a_PU8_93-110
CI=0.49


[111-130]:
1b65a_PU8_111-130
CI=0.47


[131-149]:
1b65a_PU8_131-149
CI=0.10


[150-165]:
1b65a_PU8_150-165
CI=0.00


[166-188]:
1b65a_PU8_166-188
CI=2.77


[189-212]:
1b65a_PU8_189-212
CI=1.82


[213-237]:
1b65a_PU8_213-237
CI=1.20


[238-286]:
1b65a_PU8_238-286
CI=2.57


[287-302]:
1b65a_PU8_287-302
CI=0.34


[303-331]:
1b65a_PU8_303-331
CI=0.00


[332-347]:
1b65a_PU8_332-347
CI=1.75


[348-363 ]:
1b65a_PU8_348-363
CI=0.68


Level 9
PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU9_1-19
CI=0.19


[20-36]:
1b65a_PU9_20-36
CI=0.55


[37-64]:
1b65a_PU9_37-64
CI=0.87


[65-92]:
1b65a_PU9_65-92
CI=1.68


[93-110]:
1b65a_PU9_93-110
CI=0.49


[111-130]:
1b65a_PU9_111-130
CI=0.47


[131-149]:
1b65a_PU9_131-149
CI=0.10


[150-165]:
1b65a_PU9_150-165
CI=0.00


[166-188]:
1b65a_PU9_166-188
CI=2.77


[189-212]:
1b65a_PU9_189-212
CI=1.82


[213-237]:
1b65a_PU9_213-237
CI=1.20


[238-286]:
1b65a_PU9_238-286
CI=2.57


[287-302]:
1b65a_PU9_287-302
CI=0.34


[303-331]:
1b65a_PU9_303-331
CI=0.00


[332-347]:
1b65a_PU9_332-347
CI=1.75


[348-363 ]:
1b65a_PU9_348-363
CI=0.68


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-19]:
1b65a_PU_1-19
CI=0.19


[20-36]:
1b65a_PU_20-36
CI=0.55


[37-64]:
1b65a_PU_37-64
CI=0.87


[65-92]:
1b65a_PU_65-92
CI=1.68


[93-110]:
1b65a_PU_93-110
CI=0.49


[111-130]:
1b65a_PU_111-130
CI=0.47


[131-149]:
1b65a_PU_131-149
CI=0.10


[150-165]:
1b65a_PU_150-165
CI=0.00


[166-188]:
1b65a_PU_166-188
CI=2.77


[189-212]:
1b65a_PU_189-212
CI=1.82


[213-237]:
1b65a_PU_213-237
CI=1.20


[238-259]:
1b65a_PU_238-259
CI=0.08


[260-286]:
1b65a_PU_260-286
CI=0.34


[287-302]:
1b65a_PU_287-302
CI=0.34


[303-331]:
1b65a_PU_303-331
CI=0.00


[332-347]:
1b65a_PU_332-347
CI=1.75


[348-363 ]:
1b65a_PU_348-363
CI=0.68