Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1bgc0_PU0_1-24
CI=0.07


[25-49]:
1bgc0_PU0_25-49
CI=0.52


[50-158 ]:
1bgc0_PU0_50-158
CI=2.63


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1bgc0_PU1_1-24
CI=0.07


[25-49]:
1bgc0_PU1_25-49
CI=0.52


[50-74]:
1bgc0_PU1_50-74
CI=2.53


[75-144]:
1bgc0_PU1_75-144
CI=1.57


[145-158 ]:
1bgc0_PU1_145-158
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1bgc0_PU_1-24
CI=0.07


[25-49]:
1bgc0_PU_25-49
CI=0.52


[50-74]:
1bgc0_PU_50-74
CI=2.53


[75-103]:
1bgc0_PU_75-103
CI=1.09


[104-121]:
1bgc0_PU_104-121
CI=0.31


[122-144]:
1bgc0_PU_122-144
CI=0.08


[145-158 ]:
1bgc0_PU_145-158
CI=0.00