Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-29]:
1buoa_PU0_1-29
CI=0.19


[30-121 ]:
1buoa_PU0_30-121
CI=2.45


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1buoa_PU1_1-29
CI=0.19


[30-68]:
1buoa_PU1_30-68
CI=2.36


[69-121 ]:
1buoa_PU1_69-121
CI=1.43


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1buoa_PU2_1-29
CI=0.19


[30-68]:
1buoa_PU2_30-68
CI=2.36


[69-89]:
1buoa_PU2_69-89
CI=0.80


[90-121 ]:
1buoa_PU2_90-121
CI=0.87


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-29]:
1buoa_PU_1-29
CI=0.19


[30-50]:
1buoa_PU_30-50
CI=1.61


[51-68]:
1buoa_PU_51-68
CI=0.00


[69-89]:
1buoa_PU_69-89
CI=0.80


[90-121 ]:
1buoa_PU_90-121
CI=0.87