Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-67]:
1by20_PU0_1-67
CI=3.62


[68-96]:
1by20_PU0_68-96
CI=2.94


[97-112 ]:
1by20_PU0_97-112
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1by20_PU1_1-31
CI=3.32


[32-67]:
1by20_PU1_32-67
CI=1.78


[68-96]:
1by20_PU1_68-96
CI=2.94


[97-112 ]:
1by20_PU1_97-112
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-31]:
1by20_PU_1-31
CI=3.32


[32-51]:
1by20_PU_32-51
CI=0.18


[52-67]:
1by20_PU_52-67
CI=0.00


[68-96]:
1by20_PU_68-96
CI=2.94


[97-112 ]:
1by20_PU_97-112
CI=0.00