Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-93]:
1ccza_PU0_1-93
CI=4.88


[94-171 ]:
1ccza_PU0_94-171
CI=5.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ccza_PU1_1-16
CI=0.45


[17-63]:
1ccza_PU1_17-63
CI=3.74


[64-93]:
1ccza_PU1_64-93
CI=2.08


[94-171 ]:
1ccza_PU1_94-171
CI=5.05


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ccza_PU2_1-16
CI=0.45


[17-63]:
1ccza_PU2_17-63
CI=3.74


[64-93]:
1ccza_PU2_64-93
CI=2.08


[94-119]:
1ccza_PU2_94-119
CI=2.56


[120-148]:
1ccza_PU2_120-148
CI=2.16


[149-171 ]:
1ccza_PU2_149-171
CI=1.97


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1ccza_PU_1-16
CI=0.45


[17-44]:
1ccza_PU_17-44
CI=2.03


[45-63]:
1ccza_PU_45-63
CI=1.36


[64-93]:
1ccza_PU_64-93
CI=2.08


[94-119]:
1ccza_PU_94-119
CI=2.56


[120-148]:
1ccza_PU_120-148
CI=2.16


[149-171 ]:
1ccza_PU_149-171
CI=1.97