Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1cdca_PU0_1-19
CI=0.68


[20-96 ]:
1cdca_PU0_20-96
CI=2.50


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-19]:
1cdca_PU_1-19
CI=0.68


[20-46]:
1cdca_PU_20-46
CI=1.75


[47-69]:
1cdca_PU_47-69
CI=1.47


[70-96 ]:
1cdca_PU_70-96
CI=2.75