Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1ci4a_PU0_1-44
CI=2.43


[45-73]:
1ci4a_PU0_45-73
CI=1.30


[74-87 ]:
1ci4a_PU0_74-87
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ci4a_PU_1-17
CI=0.10


[18-44]:
1ci4a_PU_18-44
CI=1.95


[45-73]:
1ci4a_PU_45-73
CI=1.30


[74-87 ]:
1ci4a_PU_74-87
CI=0.00