Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1cxc0_PU0_1-44
CI=2.55


[45-105]:
1cxc0_PU0_45-105
CI=2.77


[106-124 ]:
1cxc0_PU0_106-124
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-44]:
1cxc0_PU1_1-44
CI=2.55


[45-71]:
1cxc0_PU1_45-71
CI=1.96


[72-105]:
1cxc0_PU1_72-105
CI=2.27


[106-124 ]:
1cxc0_PU1_106-124
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1cxc0_PU_1-17
CI=0.00


[18-44]:
1cxc0_PU_18-44
CI=3.21


[45-71]:
1cxc0_PU_45-71
CI=1.96


[72-105]:
1cxc0_PU_72-105
CI=2.27


[106-124 ]:
1cxc0_PU_106-124
CI=0.00