Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-87]:
1d2sa_PU0_1-87
CI=3.10


[88-117]:
1d2sa_PU0_88-117
CI=3.48


[118-170 ]:
1d2sa_PU0_118-170
CI=0.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1d2sa_PU1_1-27
CI=0.49


[28-87]:
1d2sa_PU1_28-87
CI=4.21


[88-117]:
1d2sa_PU1_88-117
CI=3.48


[118-170 ]:
1d2sa_PU1_118-170
CI=0.50


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1d2sa_PU2_1-27
CI=0.49


[28-87]:
1d2sa_PU2_28-87
CI=4.21


[88-117]:
1d2sa_PU2_88-117
CI=3.48


[118-144]:
1d2sa_PU2_118-144
CI=0.83


[145-170 ]:
1d2sa_PU2_145-170
CI=0.07


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1d2sa_PU_1-27
CI=0.49


[28-59]:
1d2sa_PU_28-59
CI=1.85


[60-87]:
1d2sa_PU_60-87
CI=2.43


[88-117]:
1d2sa_PU_88-117
CI=3.48


[118-144]:
1d2sa_PU_118-144
CI=0.83


[145-170 ]:
1d2sa_PU_145-170
CI=0.07