Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-127]:
1d7oa_PU0_1-127
CI=3.35


[128-297 ]:
1d7oa_PU0_128-297
CI=3.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-127]:
1d7oa_PU1_1-127
CI=3.35


[128-222]:
1d7oa_PU1_128-222
CI=3.57


[223-297 ]:
1d7oa_PU1_223-297
CI=2.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-127]:
1d7oa_PU2_1-127
CI=3.35


[128-222]:
1d7oa_PU2_128-222
CI=3.57


[223-256]:
1d7oa_PU2_223-256
CI=2.26


[257-280]:
1d7oa_PU2_257-280
CI=0.15


[281-297 ]:
1d7oa_PU2_281-297
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-78]:
1d7oa_PU3_1-78
CI=3.02


[79-118]:
1d7oa_PU3_79-118
CI=1.19


[119-127]:
1d7oa_PU3_119-127
CI=0.00


[128-222]:
1d7oa_PU3_128-222
CI=3.57


[223-256]:
1d7oa_PU3_223-256
CI=2.26


[257-280]:
1d7oa_PU3_257-280
CI=0.15


[281-297 ]:
1d7oa_PU3_281-297
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-78]:
1d7oa_PU4_1-78
CI=3.02


[79-102]:
1d7oa_PU4_79-102
CI=0.32


[103-118]:
1d7oa_PU4_103-118
CI=0.23


[119-127]:
1d7oa_PU4_119-127
CI=0.00


[128-222]:
1d7oa_PU4_128-222
CI=3.57


[223-256]:
1d7oa_PU4_223-256
CI=2.26


[257-280]:
1d7oa_PU4_257-280
CI=0.15


[281-297 ]:
1d7oa_PU4_281-297
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-78]:
1d7oa_PU5_1-78
CI=3.02


[79-102]:
1d7oa_PU5_79-102
CI=0.32


[103-118]:
1d7oa_PU5_103-118
CI=0.23


[119-127]:
1d7oa_PU5_119-127
CI=0.00


[128-157]:
1d7oa_PU5_128-157
CI=1.31


[158-173]:
1d7oa_PU5_158-173
CI=0.11


[174-222]:
1d7oa_PU5_174-222
CI=2.10


[223-256]:
1d7oa_PU5_223-256
CI=2.26


[257-280]:
1d7oa_PU5_257-280
CI=0.15


[281-297 ]:
1d7oa_PU5_281-297
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-78]:
1d7oa_PU6_1-78
CI=3.02


[79-102]:
1d7oa_PU6_79-102
CI=0.32


[103-118]:
1d7oa_PU6_103-118
CI=0.23


[119-127]:
1d7oa_PU6_119-127
CI=0.00


[128-157]:
1d7oa_PU6_128-157
CI=1.31


[158-173]:
1d7oa_PU6_158-173
CI=0.11


[174-201]:
1d7oa_PU6_174-201
CI=1.33


[202-222]:
1d7oa_PU6_202-222
CI=1.23


[223-256]:
1d7oa_PU6_223-256
CI=2.26


[257-280]:
1d7oa_PU6_257-280
CI=0.15


[281-297 ]:
1d7oa_PU6_281-297
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-41]:
1d7oa_PU7_1-41
CI=2.93


[42-78]:
1d7oa_PU7_42-78
CI=0.73


[79-102]:
1d7oa_PU7_79-102
CI=0.32


[103-118]:
1d7oa_PU7_103-118
CI=0.23


[119-127]:
1d7oa_PU7_119-127
CI=0.00


[128-157]:
1d7oa_PU7_128-157
CI=1.31


[158-173]:
1d7oa_PU7_158-173
CI=0.11


[174-201]:
1d7oa_PU7_174-201
CI=1.33


[202-222]:
1d7oa_PU7_202-222
CI=1.23


[223-256]:
1d7oa_PU7_223-256
CI=2.26


[257-280]:
1d7oa_PU7_257-280
CI=0.15


[281-297 ]:
1d7oa_PU7_281-297
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-41]:
1d7oa_PU8_1-41
CI=2.93


[42-58]:
1d7oa_PU8_42-58
CI=0.11


[59-78]:
1d7oa_PU8_59-78
CI=0.66


[79-102]:
1d7oa_PU8_79-102
CI=0.32


[103-118]:
1d7oa_PU8_103-118
CI=0.23


[119-127]:
1d7oa_PU8_119-127
CI=0.00


[128-157]:
1d7oa_PU8_128-157
CI=1.31


[158-173]:
1d7oa_PU8_158-173
CI=0.11


[174-201]:
1d7oa_PU8_174-201
CI=1.33


[202-222]:
1d7oa_PU8_202-222
CI=1.23


[223-256]:
1d7oa_PU8_223-256
CI=2.26


[257-280]:
1d7oa_PU8_257-280
CI=0.15


[281-297 ]:
1d7oa_PU8_281-297
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-41]:
1d7oa_PU9_1-41
CI=2.93


[42-58]:
1d7oa_PU9_42-58
CI=0.11


[59-78]:
1d7oa_PU9_59-78
CI=0.66


[79-102]:
1d7oa_PU9_79-102
CI=0.32


[103-118]:
1d7oa_PU9_103-118
CI=0.23


[119-127]:
1d7oa_PU9_119-127
CI=0.00


[128-157]:
1d7oa_PU9_128-157
CI=1.31


[158-173]:
1d7oa_PU9_158-173
CI=0.11


[174-201]:
1d7oa_PU9_174-201
CI=1.33


[202-222]:
1d7oa_PU9_202-222
CI=1.23


[223-240]:
1d7oa_PU9_223-240
CI=0.91


[241-256]:
1d7oa_PU9_241-256
CI=0.68


[257-280]:
1d7oa_PU9_257-280
CI=0.15


[281-297 ]:
1d7oa_PU9_281-297
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-25]:
1d7oa_PU_1-25
CI=0.82


[26-41]:
1d7oa_PU_26-41
CI=0.56


[42-58]:
1d7oa_PU_42-58
CI=0.11


[59-78]:
1d7oa_PU_59-78
CI=0.66


[79-102]:
1d7oa_PU_79-102
CI=0.32


[103-118]:
1d7oa_PU_103-118
CI=0.23


[119-127]:
1d7oa_PU_119-127
CI=0.00


[128-157]:
1d7oa_PU_128-157
CI=1.31


[158-173]:
1d7oa_PU_158-173
CI=0.11


[174-201]:
1d7oa_PU_174-201
CI=1.33


[202-222]:
1d7oa_PU_202-222
CI=1.23


[223-240]:
1d7oa_PU_223-240
CI=0.91


[241-256]:
1d7oa_PU_241-256
CI=0.68


[257-280]:
1d7oa_PU_257-280
CI=0.15


[281-297 ]:
1d7oa_PU_281-297
CI=0.00