Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1dk8a_PU0_1-39
CI=1.43


[40-119]:
1dk8a_PU0_40-119
CI=1.61


[120-147 ]:
1dk8a_PU0_120-147
CI=0.20


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1dk8a_PU1_1-22
CI=0.83


[23-39]:
1dk8a_PU1_23-39
CI=0.65


[40-119]:
1dk8a_PU1_40-119
CI=1.61


[120-147 ]:
1dk8a_PU1_120-147
CI=0.20


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1dk8a_PU2_1-22
CI=0.83


[23-39]:
1dk8a_PU2_23-39
CI=0.65


[40-55]:
1dk8a_PU2_40-55
CI=0.11


[56-105]:
1dk8a_PU2_56-105
CI=0.88


[106-119]:
1dk8a_PU2_106-119
CI=0.00


[120-147 ]:
1dk8a_PU2_120-147
CI=0.20


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-22]:
1dk8a_PU_1-22
CI=0.83


[23-39]:
1dk8a_PU_23-39
CI=0.65


[40-55]:
1dk8a_PU_40-55
CI=0.11


[56-86]:
1dk8a_PU_56-86
CI=0.49


[87-105]:
1dk8a_PU_87-105
CI=0.29


[106-119]:
1dk8a_PU_106-119
CI=0.00


[120-147 ]:
1dk8a_PU_120-147
CI=0.20