Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-73]:
1dqia_PU0_1-73
CI=2.62


[74-89]:
1dqia_PU0_74-89
CI=2.66


[90-124 ]:
1dqia_PU0_90-124
CI=1.76


Level 1
PU
Molecule needs Java 1.4 Structure


[1-49]:
1dqia_PU1_1-49
CI=2.19


[50-73]:
1dqia_PU1_50-73
CI=3.00


[74-89]:
1dqia_PU1_74-89
CI=2.66


[90-124 ]:
1dqia_PU1_90-124
CI=1.76


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1dqia_PU_1-17
CI=0.54


[18-49]:
1dqia_PU_18-49
CI=2.13


[50-73]:
1dqia_PU_50-73
CI=3.00


[74-89]:
1dqia_PU_74-89
CI=2.66


[90-124 ]:
1dqia_PU_90-124
CI=1.76