Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ew0a_PU0_1-21
CI=0.08


[22-130 ]:
1ew0a_PU0_22-130
CI=4.34


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ew0a_PU1_1-21
CI=0.08


[22-66]:
1ew0a_PU1_22-66
CI=3.86


[67-87]:
1ew0a_PU1_67-87
CI=0.09


[88-130 ]:
1ew0a_PU1_88-130
CI=3.45


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ew0a_PU2_1-21
CI=0.08


[22-66]:
1ew0a_PU2_22-66
CI=3.86


[67-87]:
1ew0a_PU2_67-87
CI=0.09


[88-110]:
1ew0a_PU2_88-110
CI=2.47


[111-130 ]:
1ew0a_PU2_111-130
CI=1.69


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1ew0a_PU_1-21
CI=0.08


[22-48]:
1ew0a_PU_22-48
CI=3.56


[49-66]:
1ew0a_PU_49-66
CI=0.19


[67-87]:
1ew0a_PU_67-87
CI=0.09


[88-110]:
1ew0a_PU_88-110
CI=2.47


[111-130 ]:
1ew0a_PU_111-130
CI=1.69