Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1fg7a_PU0_1-39
CI=0.23


[40-261]:
1fg7a_PU0_40-261
CI=3.94


[262-351 ]:
1fg7a_PU0_262-351
CI=2.96


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU1_1-17
CI=0.21


[18-39]:
1fg7a_PU1_18-39
CI=0.24


[40-261]:
1fg7a_PU1_40-261
CI=3.94


[262-351 ]:
1fg7a_PU1_262-351
CI=2.96


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU2_1-17
CI=0.21


[18-39]:
1fg7a_PU2_18-39
CI=0.24


[40-89]:
1fg7a_PU2_40-89
CI=0.65


[90-193]:
1fg7a_PU2_90-193
CI=3.53


[194-261]:
1fg7a_PU2_194-261
CI=1.76


[262-351 ]:
1fg7a_PU2_262-351
CI=2.96


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU3_1-17
CI=0.21


[18-39]:
1fg7a_PU3_18-39
CI=0.24


[40-56]:
1fg7a_PU3_40-56
CI=0.00


[57-89]:
1fg7a_PU3_57-89
CI=0.97


[90-193]:
1fg7a_PU3_90-193
CI=3.53


[194-261]:
1fg7a_PU3_194-261
CI=1.76


[262-351 ]:
1fg7a_PU3_262-351
CI=2.96


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU4_1-17
CI=0.21


[18-39]:
1fg7a_PU4_18-39
CI=0.24


[40-56]:
1fg7a_PU4_40-56
CI=0.00


[57-89]:
1fg7a_PU4_57-89
CI=0.97


[90-193]:
1fg7a_PU4_90-193
CI=3.53


[194-234]:
1fg7a_PU4_194-234
CI=2.47


[235-261]:
1fg7a_PU4_235-261
CI=0.14


[262-351 ]:
1fg7a_PU4_262-351
CI=2.96


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU5_1-17
CI=0.21


[18-39]:
1fg7a_PU5_18-39
CI=0.24


[40-56]:
1fg7a_PU5_40-56
CI=0.00


[57-89]:
1fg7a_PU5_57-89
CI=0.97


[90-193]:
1fg7a_PU5_90-193
CI=3.53


[194-234]:
1fg7a_PU5_194-234
CI=2.47


[235-261]:
1fg7a_PU5_235-261
CI=0.14


[262-295]:
1fg7a_PU5_262-295
CI=0.99


[296-329]:
1fg7a_PU5_296-329
CI=2.57


[330-351 ]:
1fg7a_PU5_330-351
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU6_1-17
CI=0.21


[18-39]:
1fg7a_PU6_18-39
CI=0.24


[40-56]:
1fg7a_PU6_40-56
CI=0.00


[57-89]:
1fg7a_PU6_57-89
CI=0.97


[90-150]:
1fg7a_PU6_90-150
CI=3.29


[151-193]:
1fg7a_PU6_151-193
CI=1.54


[194-234]:
1fg7a_PU6_194-234
CI=2.47


[235-261]:
1fg7a_PU6_235-261
CI=0.14


[262-295]:
1fg7a_PU6_262-295
CI=0.99


[296-329]:
1fg7a_PU6_296-329
CI=2.57


[330-351 ]:
1fg7a_PU6_330-351
CI=0.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU7_1-17
CI=0.21


[18-39]:
1fg7a_PU7_18-39
CI=0.24


[40-56]:
1fg7a_PU7_40-56
CI=0.00


[57-89]:
1fg7a_PU7_57-89
CI=0.97


[90-150]:
1fg7a_PU7_90-150
CI=3.29


[151-193]:
1fg7a_PU7_151-193
CI=1.54


[194-234]:
1fg7a_PU7_194-234
CI=2.47


[235-261]:
1fg7a_PU7_235-261
CI=0.14


[262-278]:
1fg7a_PU7_262-278
CI=0.00


[279-295]:
1fg7a_PU7_279-295
CI=0.66


[296-329]:
1fg7a_PU7_296-329
CI=2.57


[330-351 ]:
1fg7a_PU7_330-351
CI=0.08


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU8_1-17
CI=0.21


[18-39]:
1fg7a_PU8_18-39
CI=0.24


[40-56]:
1fg7a_PU8_40-56
CI=0.00


[57-89]:
1fg7a_PU8_57-89
CI=0.97


[90-150]:
1fg7a_PU8_90-150
CI=3.29


[151-176]:
1fg7a_PU8_151-176
CI=0.58


[177-193]:
1fg7a_PU8_177-193
CI=0.54


[194-234]:
1fg7a_PU8_194-234
CI=2.47


[235-261]:
1fg7a_PU8_235-261
CI=0.14


[262-278]:
1fg7a_PU8_262-278
CI=0.00


[279-295]:
1fg7a_PU8_279-295
CI=0.66


[296-329]:
1fg7a_PU8_296-329
CI=2.57


[330-351 ]:
1fg7a_PU8_330-351
CI=0.08


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1fg7a_PU_1-17
CI=0.21


[18-39]:
1fg7a_PU_18-39
CI=0.24


[40-56]:
1fg7a_PU_40-56
CI=0.00


[57-89]:
1fg7a_PU_57-89
CI=0.97


[90-123]:
1fg7a_PU_90-123
CI=2.62


[124-150]:
1fg7a_PU_124-150
CI=0.77


[151-176]:
1fg7a_PU_151-176
CI=0.58


[177-193]:
1fg7a_PU_177-193
CI=0.54


[194-234]:
1fg7a_PU_194-234
CI=2.47


[235-261]:
1fg7a_PU_235-261
CI=0.14


[262-278]:
1fg7a_PU_262-278
CI=0.00


[279-295]:
1fg7a_PU_279-295
CI=0.66


[296-329]:
1fg7a_PU_296-329
CI=2.57


[330-351 ]:
1fg7a_PU_330-351
CI=0.08