Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-54]:
1fsga_PU0_1-54
CI=0.64


[55-197]:
1fsga_PU0_55-197
CI=3.85


[198-233 ]:
1fsga_PU0_198-233
CI=2.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1fsga_PU1_1-20
CI=0.09


[21-54]:
1fsga_PU1_21-54
CI=0.96


[55-197]:
1fsga_PU1_55-197
CI=3.85


[198-233 ]:
1fsga_PU1_198-233
CI=2.59


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1fsga_PU2_1-20
CI=0.09


[21-54]:
1fsga_PU2_21-54
CI=0.96


[55-115]:
1fsga_PU2_55-115
CI=1.80


[116-197]:
1fsga_PU2_116-197
CI=3.55


[198-233 ]:
1fsga_PU2_198-233
CI=2.59


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1fsga_PU3_1-20
CI=0.09


[21-54]:
1fsga_PU3_21-54
CI=0.96


[55-115]:
1fsga_PU3_55-115
CI=1.80


[116-135]:
1fsga_PU3_116-135
CI=2.26


[136-197]:
1fsga_PU3_136-197
CI=3.55


[198-233 ]:
1fsga_PU3_198-233
CI=2.59


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1fsga_PU4_1-20
CI=0.09


[21-54]:
1fsga_PU4_21-54
CI=0.96


[55-71]:
1fsga_PU4_55-71
CI=0.00


[72-115]:
1fsga_PU4_72-115
CI=1.83


[116-135]:
1fsga_PU4_116-135
CI=2.26


[136-197]:
1fsga_PU4_136-197
CI=3.55


[198-233 ]:
1fsga_PU4_198-233
CI=2.59


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1fsga_PU5_1-20
CI=0.09


[21-54]:
1fsga_PU5_21-54
CI=0.96


[55-71]:
1fsga_PU5_55-71
CI=0.00


[72-115]:
1fsga_PU5_72-115
CI=1.83


[116-135]:
1fsga_PU5_116-135
CI=2.26


[136-155]:
1fsga_PU5_136-155
CI=0.00


[156-171]:
1fsga_PU5_156-171
CI=0.00


[172-197]:
1fsga_PU5_172-197
CI=2.48


[198-233 ]:
1fsga_PU5_198-233
CI=2.59


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1fsga_PU6_1-20
CI=0.09


[21-54]:
1fsga_PU6_21-54
CI=0.96


[55-71]:
1fsga_PU6_55-71
CI=0.00


[72-91]:
1fsga_PU6_72-91
CI=0.46


[92-115]:
1fsga_PU6_92-115
CI=0.46


[116-135]:
1fsga_PU6_116-135
CI=2.26


[136-155]:
1fsga_PU6_136-155
CI=0.00


[156-171]:
1fsga_PU6_156-171
CI=0.00


[172-197]:
1fsga_PU6_172-197
CI=2.48


[198-233 ]:
1fsga_PU6_198-233
CI=2.59


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1fsga_PU7_1-20
CI=0.09


[21-54]:
1fsga_PU7_21-54
CI=0.96


[55-71]:
1fsga_PU7_55-71
CI=0.00


[72-91]:
1fsga_PU7_72-91
CI=0.46


[92-115]:
1fsga_PU7_92-115
CI=0.46


[116-135]:
1fsga_PU7_116-135
CI=2.26


[136-155]:
1fsga_PU7_136-155
CI=0.00


[156-171]:
1fsga_PU7_156-171
CI=0.00


[172-197]:
1fsga_PU7_172-197
CI=2.48


[198-217]:
1fsga_PU7_198-217
CI=1.86


[218-233 ]:
1fsga_PU7_218-233
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1fsga_PU_1-20
CI=0.09


[21-37]:
1fsga_PU_21-37
CI=0.00


[38-54]:
1fsga_PU_38-54
CI=0.00


[55-71]:
1fsga_PU_55-71
CI=0.00


[72-91]:
1fsga_PU_72-91
CI=0.46


[92-115]:
1fsga_PU_92-115
CI=0.46


[116-135]:
1fsga_PU_116-135
CI=2.26


[136-155]:
1fsga_PU_136-155
CI=0.00


[156-171]:
1fsga_PU_156-171
CI=0.00


[172-197]:
1fsga_PU_172-197
CI=2.48


[198-217]:
1fsga_PU_198-217
CI=1.86


[218-233 ]:
1fsga_PU_218-233
CI=0.00