Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1g4yb_PU0_1-58
CI=1.38


[59-81 ]:
1g4yb_PU0_59-81
CI=0.57


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-17]:
1g4yb_PU_1-17
CI=0.00


[18-42]:
1g4yb_PU_18-42
CI=1.05


[43-58]:
1g4yb_PU_43-58
CI=0.00


[59-81 ]:
1g4yb_PU_59-81
CI=0.57