Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1gefa_PU0_1-49
CI=2.39


[50-120 ]:
1gefa_PU0_50-120
CI=3.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-49]:
1gefa_PU1_1-49
CI=2.39


[50-104]:
1gefa_PU1_50-104
CI=3.27


[105-120 ]:
1gefa_PU1_105-120
CI=0.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gefa_PU2_1-20
CI=0.00


[21-49]:
1gefa_PU2_21-49
CI=2.90


[50-104]:
1gefa_PU2_50-104
CI=3.27


[105-120 ]:
1gefa_PU2_105-120
CI=0.22


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1gefa_PU_1-20
CI=0.00


[21-49]:
1gefa_PU_21-49
CI=2.90


[50-73]:
1gefa_PU_50-73
CI=0.00


[74-104]:
1gefa_PU_74-104
CI=1.96


[105-120 ]:
1gefa_PU_105-120
CI=0.22