Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-83]:
1gu2a_PU0_1-83
CI=2.77


[84-104]:
1gu2a_PU0_84-104
CI=1.41


[105-124 ]:
1gu2a_PU0_105-124
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1gu2a_PU1_1-26
CI=0.93


[27-74]:
1gu2a_PU1_27-74
CI=2.95


[75-83]:
1gu2a_PU1_75-83
CI=0.40


[84-104]:
1gu2a_PU1_84-104
CI=1.41


[105-124 ]:
1gu2a_PU1_105-124
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-26]:
1gu2a_PU_1-26
CI=0.93


[27-47]:
1gu2a_PU_27-47
CI=0.63


[48-74]:
1gu2a_PU_48-74
CI=3.49


[75-83]:
1gu2a_PU_75-83
CI=0.40


[84-104]:
1gu2a_PU_84-104
CI=1.41


[105-124 ]:
1gu2a_PU_105-124
CI=0.00