Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvna_PU0_1-19
CI=0.00


[20-54]:
1gvna_PU0_20-54
CI=1.40


[55-87 ]:
1gvna_PU0_55-87
CI=0.11


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvna_PU1_1-19
CI=0.00


[20-54]:
1gvna_PU1_20-54
CI=1.40


[55-71]:
1gvna_PU1_55-71
CI=0.21


[72-87 ]:
1gvna_PU1_72-87
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvna_PU_1-19
CI=0.00


[20-36]:
1gvna_PU_20-36
CI=0.43


[37-54]:
1gvna_PU_37-54
CI=0.21


[55-71]:
1gvna_PU_55-71
CI=0.21


[72-87 ]:
1gvna_PU_72-87
CI=0.00