Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-157]:
1gz8a_PU0_1-157
CI=3.64


[158-279]:
1gz8a_PU0_158-279
CI=2.96


[280-290 ]:
1gz8a_PU0_280-290
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1gz8a_PU1_1-36
CI=3.74


[37-147]:
1gz8a_PU1_37-147
CI=2.94


[148-157]:
1gz8a_PU1_148-157
CI=1.09


[158-279]:
1gz8a_PU1_158-279
CI=2.96


[280-290 ]:
1gz8a_PU1_280-290
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-36]:
1gz8a_PU2_1-36
CI=3.74


[37-147]:
1gz8a_PU2_37-147
CI=2.94


[148-157]:
1gz8a_PU2_148-157
CI=1.09


[158-196]:
1gz8a_PU2_158-196
CI=1.99


[197-238]:
1gz8a_PU2_197-238
CI=1.94


[239-279]:
1gz8a_PU2_239-279
CI=0.97


[280-290 ]:
1gz8a_PU2_280-290
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-36]:
1gz8a_PU3_1-36
CI=3.74


[37-75]:
1gz8a_PU3_37-75
CI=1.67


[76-139]:
1gz8a_PU3_76-139
CI=2.33


[140-147]:
1gz8a_PU3_140-147
CI=0.21


[148-157]:
1gz8a_PU3_148-157
CI=1.09


[158-196]:
1gz8a_PU3_158-196
CI=1.99


[197-238]:
1gz8a_PU3_197-238
CI=1.94


[239-279]:
1gz8a_PU3_239-279
CI=0.97


[280-290 ]:
1gz8a_PU3_280-290
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-36]:
1gz8a_PU4_1-36
CI=3.74


[37-75]:
1gz8a_PU4_37-75
CI=1.67


[76-91]:
1gz8a_PU4_76-91
CI=0.11


[92-117]:
1gz8a_PU4_92-117
CI=0.15


[118-139]:
1gz8a_PU4_118-139
CI=2.13


[140-147]:
1gz8a_PU4_140-147
CI=0.21


[148-157]:
1gz8a_PU4_148-157
CI=1.09


[158-196]:
1gz8a_PU4_158-196
CI=1.99


[197-238]:
1gz8a_PU4_197-238
CI=1.94


[239-279]:
1gz8a_PU4_239-279
CI=0.97


[280-290 ]:
1gz8a_PU4_280-290
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-36]:
1gz8a_PU5_1-36
CI=3.74


[37-75]:
1gz8a_PU5_37-75
CI=1.67


[76-91]:
1gz8a_PU5_76-91
CI=0.11


[92-117]:
1gz8a_PU5_92-117
CI=0.15


[118-139]:
1gz8a_PU5_118-139
CI=2.13


[140-147]:
1gz8a_PU5_140-147
CI=0.21


[148-157]:
1gz8a_PU5_148-157
CI=1.09


[158-196]:
1gz8a_PU5_158-196
CI=1.99


[197-238]:
1gz8a_PU5_197-238
CI=1.94


[239-256]:
1gz8a_PU5_239-256
CI=0.61


[257-279]:
1gz8a_PU5_257-279
CI=0.58


[280-290 ]:
1gz8a_PU5_280-290
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-36]:
1gz8a_PU6_1-36
CI=3.74


[37-56]:
1gz8a_PU6_37-56
CI=0.00


[57-75]:
1gz8a_PU6_57-75
CI=2.36


[76-91]:
1gz8a_PU6_76-91
CI=0.11


[92-117]:
1gz8a_PU6_92-117
CI=0.15


[118-139]:
1gz8a_PU6_118-139
CI=2.13


[140-147]:
1gz8a_PU6_140-147
CI=0.21


[148-157]:
1gz8a_PU6_148-157
CI=1.09


[158-196]:
1gz8a_PU6_158-196
CI=1.99


[197-238]:
1gz8a_PU6_197-238
CI=1.94


[239-256]:
1gz8a_PU6_239-256
CI=0.61


[257-279]:
1gz8a_PU6_257-279
CI=0.58


[280-290 ]:
1gz8a_PU6_280-290
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-36]:
1gz8a_PU_1-36
CI=3.74


[37-56]:
1gz8a_PU_37-56
CI=0.00


[57-75]:
1gz8a_PU_57-75
CI=2.36


[76-91]:
1gz8a_PU_76-91
CI=0.11


[92-117]:
1gz8a_PU_92-117
CI=0.15


[118-139]:
1gz8a_PU_118-139
CI=2.13


[140-147]:
1gz8a_PU_140-147
CI=0.21


[148-157]:
1gz8a_PU_148-157
CI=1.09


[158-180]:
1gz8a_PU_158-180
CI=1.30


[181-196]:
1gz8a_PU_181-196
CI=1.14


[197-238]:
1gz8a_PU_197-238
CI=1.94


[239-256]:
1gz8a_PU_239-256
CI=0.61


[257-279]:
1gz8a_PU_257-279
CI=0.58


[280-290 ]:
1gz8a_PU_280-290
CI=0.00