Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-59]:
1h9oa_PU0_1-59
CI=3.27


[60-85]:
1h9oa_PU0_60-85
CI=2.40


[86-108 ]:
1h9oa_PU0_86-108
CI=1.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h9oa_PU1_1-17
CI=0.22


[18-59]:
1h9oa_PU1_18-59
CI=3.56


[60-85]:
1h9oa_PU1_60-85
CI=2.40


[86-108 ]:
1h9oa_PU1_86-108
CI=1.89


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1h9oa_PU_1-17
CI=0.22


[18-37]:
1h9oa_PU_18-37
CI=0.74


[38-59]:
1h9oa_PU_38-59
CI=2.23


[60-85]:
1h9oa_PU_60-85
CI=2.40


[86-108 ]:
1h9oa_PU_86-108
CI=1.89