Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-82]:
1hqka_PU0_1-82
CI=3.60


[83-108]:
1hqka_PU0_83-108
CI=0.14


[109-154 ]:
1hqka_PU0_109-154
CI=1.98


Level 1
PU
Molecule needs Java 1.4 Structure


[1-82]:
1hqka_PU1_1-82
CI=3.60


[83-108]:
1hqka_PU1_83-108
CI=0.14


[109-138]:
1hqka_PU1_109-138
CI=1.63


[139-154 ]:
1hqka_PU1_139-154
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1hqka_PU2_1-23
CI=0.00


[24-43]:
1hqka_PU2_24-43
CI=0.00


[44-82]:
1hqka_PU2_44-82
CI=0.96


[83-108]:
1hqka_PU2_83-108
CI=0.14


[109-138]:
1hqka_PU2_109-138
CI=1.63


[139-154 ]:
1hqka_PU2_139-154
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-23]:
1hqka_PU_1-23
CI=0.00


[24-43]:
1hqka_PU_24-43
CI=0.00


[44-62]:
1hqka_PU_44-62
CI=0.38


[63-82]:
1hqka_PU_63-82
CI=0.56


[83-108]:
1hqka_PU_83-108
CI=0.14


[109-138]:
1hqka_PU_109-138
CI=1.63


[139-154 ]:
1hqka_PU_139-154
CI=0.00