Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1i0va_PU0_1-16
CI=1.50


[17-90]:
1i0va_PU0_17-90
CI=3.87


[91-104 ]:
1i0va_PU0_91-104
CI=1.56


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1i0va_PU1_1-16
CI=1.50


[17-41]:
1i0va_PU1_17-41
CI=0.89


[42-90]:
1i0va_PU1_42-90
CI=3.17


[91-104 ]:
1i0va_PU1_91-104
CI=1.56


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1i0va_PU_1-16
CI=1.50


[17-41]:
1i0va_PU_17-41
CI=0.89


[42-59]:
1i0va_PU_42-59
CI=0.92


[60-90]:
1i0va_PU_60-90
CI=2.51


[91-104 ]:
1i0va_PU_91-104
CI=1.56