Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-73]:
1ijya_PU0_1-73
CI=2.76


[74-122 ]:
1ijya_PU0_74-122
CI=2.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1ijya_PU1_1-32
CI=1.79


[33-61]:
1ijya_PU1_33-61
CI=0.39


[62-73]:
1ijya_PU1_62-73
CI=1.04


[74-122 ]:
1ijya_PU1_74-122
CI=2.38


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1ijya_PU2_1-32
CI=1.79


[33-61]:
1ijya_PU2_33-61
CI=0.39


[62-73]:
1ijya_PU2_62-73
CI=1.04


[74-106]:
1ijya_PU2_74-106
CI=0.85


[107-122 ]:
1ijya_PU2_107-122
CI=1.38


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1ijya_PU_1-32
CI=1.79


[33-61]:
1ijya_PU_33-61
CI=0.39


[62-73]:
1ijya_PU_62-73
CI=1.04


[74-90]:
1ijya_PU_74-90
CI=0.00


[91-106]:
1ijya_PU_91-106
CI=0.33


[107-122 ]:
1ijya_PU_107-122
CI=1.38