Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-28]:
1j2la_PU0_1-28
CI=2.62


[29-68 ]:
1j2la_PU0_29-68
CI=4.45


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-28]:
1j2la_PU_1-28
CI=2.62


[29-45]:
1j2la_PU_29-45
CI=0.76


[46-68 ]:
1j2la_PU_46-68
CI=1.64