Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-61]:
1j3wa_PU0_1-61
CI=2.74


[62-77]:
1j3wa_PU0_62-77
CI=1.37


[78-134 ]:
1j3wa_PU0_78-134
CI=2.76


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1j3wa_PU1_1-24
CI=0.07


[25-61]:
1j3wa_PU1_25-61
CI=2.62


[62-77]:
1j3wa_PU1_62-77
CI=1.37


[78-134 ]:
1j3wa_PU1_78-134
CI=2.76


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1j3wa_PU2_1-24
CI=0.07


[25-61]:
1j3wa_PU2_25-61
CI=2.62


[62-77]:
1j3wa_PU2_62-77
CI=1.37


[78-118]:
1j3wa_PU2_78-118
CI=2.94


[119-134 ]:
1j3wa_PU2_119-134
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-24]:
1j3wa_PU3_1-24
CI=0.07


[25-45]:
1j3wa_PU3_25-45
CI=2.24


[46-61]:
1j3wa_PU3_46-61
CI=0.00


[62-77]:
1j3wa_PU3_62-77
CI=1.37


[78-118]:
1j3wa_PU3_78-118
CI=2.94


[119-134 ]:
1j3wa_PU3_119-134
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-24]:
1j3wa_PU_1-24
CI=0.07


[25-45]:
1j3wa_PU_25-45
CI=2.24


[46-61]:
1j3wa_PU_46-61
CI=0.00


[62-77]:
1j3wa_PU_62-77
CI=1.37


[78-96]:
1j3wa_PU_78-96
CI=1.78


[97-118]:
1j3wa_PU_97-118
CI=0.17


[119-134 ]:
1j3wa_PU_119-134
CI=0.00