Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j8ba_PU0_1-17
CI=0.00


[18-85 ]:
1j8ba_PU0_18-85
CI=3.66


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j8ba_PU1_1-17
CI=0.00


[18-69]:
1j8ba_PU1_18-69
CI=3.96


[70-85 ]:
1j8ba_PU1_70-85
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j8ba_PU2_1-17
CI=0.00


[18-50]:
1j8ba_PU2_18-50
CI=3.58


[51-69]:
1j8ba_PU2_51-69
CI=0.10


[70-85 ]:
1j8ba_PU2_70-85
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1j8ba_PU_1-17
CI=0.00


[18-34]:
1j8ba_PU_18-34
CI=0.99


[35-50]:
1j8ba_PU_35-50
CI=1.03


[51-69]:
1j8ba_PU_51-69
CI=0.10


[70-85 ]:
1j8ba_PU_70-85
CI=0.00