Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-168]:
1jk7a_PU0_1-168
CI=3.82


[169-235]:
1jk7a_PU0_169-235
CI=3.06


[236-294 ]:
1jk7a_PU0_236-294
CI=4.84


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU1_1-29
CI=0.77


[30-168]:
1jk7a_PU1_30-168
CI=4.12


[169-235]:
1jk7a_PU1_169-235
CI=3.06


[236-294 ]:
1jk7a_PU1_236-294
CI=4.84


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU2_1-29
CI=0.77


[30-121]:
1jk7a_PU2_30-121
CI=3.32


[122-148]:
1jk7a_PU2_122-148
CI=0.70


[149-168]:
1jk7a_PU2_149-168
CI=1.40


[169-235]:
1jk7a_PU2_169-235
CI=3.06


[236-294 ]:
1jk7a_PU2_236-294
CI=4.84


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU3_1-29
CI=0.77


[30-49]:
1jk7a_PU3_30-49
CI=0.00


[50-121]:
1jk7a_PU3_50-121
CI=3.91


[122-148]:
1jk7a_PU3_122-148
CI=0.70


[149-168]:
1jk7a_PU3_149-168
CI=1.40


[169-235]:
1jk7a_PU3_169-235
CI=3.06


[236-294 ]:
1jk7a_PU3_236-294
CI=4.84


Level 4
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU4_1-29
CI=0.77


[30-49]:
1jk7a_PU4_30-49
CI=0.00


[50-121]:
1jk7a_PU4_50-121
CI=3.91


[122-148]:
1jk7a_PU4_122-148
CI=0.70


[149-168]:
1jk7a_PU4_149-168
CI=1.40


[169-201]:
1jk7a_PU4_169-201
CI=1.38


[202-235]:
1jk7a_PU4_202-235
CI=3.01


[236-294 ]:
1jk7a_PU4_236-294
CI=4.84


Level 5
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU5_1-29
CI=0.77


[30-49]:
1jk7a_PU5_30-49
CI=0.00


[50-121]:
1jk7a_PU5_50-121
CI=3.91


[122-148]:
1jk7a_PU5_122-148
CI=0.70


[149-168]:
1jk7a_PU5_149-168
CI=1.40


[169-201]:
1jk7a_PU5_169-201
CI=1.38


[202-235]:
1jk7a_PU5_202-235
CI=3.01


[236-262]:
1jk7a_PU5_236-262
CI=3.30


[263-294 ]:
1jk7a_PU5_263-294
CI=3.16


Level 6
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU6_1-29
CI=0.77


[30-49]:
1jk7a_PU6_30-49
CI=0.00


[50-65]:
1jk7a_PU6_50-65
CI=0.00


[66-83]:
1jk7a_PU6_66-83
CI=0.40


[84-121]:
1jk7a_PU6_84-121
CI=2.25


[122-148]:
1jk7a_PU6_122-148
CI=0.70


[149-168]:
1jk7a_PU6_149-168
CI=1.40


[169-201]:
1jk7a_PU6_169-201
CI=1.38


[202-235]:
1jk7a_PU6_202-235
CI=3.01


[236-262]:
1jk7a_PU6_236-262
CI=3.30


[263-294 ]:
1jk7a_PU6_263-294
CI=3.16


Level 7
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU7_1-29
CI=0.77


[30-49]:
1jk7a_PU7_30-49
CI=0.00


[50-65]:
1jk7a_PU7_50-65
CI=0.00


[66-83]:
1jk7a_PU7_66-83
CI=0.40


[84-121]:
1jk7a_PU7_84-121
CI=2.25


[122-148]:
1jk7a_PU7_122-148
CI=0.70


[149-168]:
1jk7a_PU7_149-168
CI=1.40


[169-185]:
1jk7a_PU7_169-185
CI=0.10


[186-201]:
1jk7a_PU7_186-201
CI=0.34


[202-235]:
1jk7a_PU7_202-235
CI=3.01


[236-262]:
1jk7a_PU7_236-262
CI=3.30


[263-294 ]:
1jk7a_PU7_263-294
CI=3.16


Level 8
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU8_1-29
CI=0.77


[30-49]:
1jk7a_PU8_30-49
CI=0.00


[50-65]:
1jk7a_PU8_50-65
CI=0.00


[66-83]:
1jk7a_PU8_66-83
CI=0.40


[84-100]:
1jk7a_PU8_84-100
CI=0.54


[101-121]:
1jk7a_PU8_101-121
CI=0.79


[122-148]:
1jk7a_PU8_122-148
CI=0.70


[149-168]:
1jk7a_PU8_149-168
CI=1.40


[169-185]:
1jk7a_PU8_169-185
CI=0.10


[186-201]:
1jk7a_PU8_186-201
CI=0.34


[202-235]:
1jk7a_PU8_202-235
CI=3.01


[236-262]:
1jk7a_PU8_236-262
CI=3.30


[263-294 ]:
1jk7a_PU8_263-294
CI=3.16


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-29]:
1jk7a_PU_1-29
CI=0.77


[30-49]:
1jk7a_PU_30-49
CI=0.00


[50-65]:
1jk7a_PU_50-65
CI=0.00


[66-83]:
1jk7a_PU_66-83
CI=0.40


[84-100]:
1jk7a_PU_84-100
CI=0.54


[101-121]:
1jk7a_PU_101-121
CI=0.79


[122-148]:
1jk7a_PU_122-148
CI=0.70


[149-168]:
1jk7a_PU_149-168
CI=1.40


[169-185]:
1jk7a_PU_169-185
CI=0.10


[186-201]:
1jk7a_PU_186-201
CI=0.34


[202-218]:
1jk7a_PU_202-218
CI=0.64


[219-235]:
1jk7a_PU_219-235
CI=0.00


[236-262]:
1jk7a_PU_236-262
CI=3.30


[263-294 ]:
1jk7a_PU_263-294
CI=3.16