Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-94]:
1jksa_PU0_1-94
CI=3.70


[95-280 ]:
1jksa_PU0_95-280
CI=3.78


Level 1
PU
Molecule needs Java 1.4 Structure


[1-94]:
1jksa_PU1_1-94
CI=3.70


[95-168]:
1jksa_PU1_95-168
CI=2.94


[169-280 ]:
1jksa_PU1_169-280
CI=2.92


Level 2
PU
Molecule needs Java 1.4 Structure


[1-45]:
1jksa_PU2_1-45
CI=2.75


[46-76]:
1jksa_PU2_46-76
CI=0.54


[77-94]:
1jksa_PU2_77-94
CI=2.19


[95-168]:
1jksa_PU2_95-168
CI=2.94


[169-280 ]:
1jksa_PU2_169-280
CI=2.92


Level 3
PU
Molecule needs Java 1.4 Structure


[1-45]:
1jksa_PU3_1-45
CI=2.75


[46-76]:
1jksa_PU3_46-76
CI=0.54


[77-94]:
1jksa_PU3_77-94
CI=2.19


[95-168]:
1jksa_PU3_95-168
CI=2.94


[169-206]:
1jksa_PU3_169-206
CI=2.11


[207-243]:
1jksa_PU3_207-243
CI=1.42


[244-280 ]:
1jksa_PU3_244-280
CI=0.83


Level 4
PU
Molecule needs Java 1.4 Structure


[1-45]:
1jksa_PU4_1-45
CI=2.75


[46-76]:
1jksa_PU4_46-76
CI=0.54


[77-94]:
1jksa_PU4_77-94
CI=2.19


[95-168]:
1jksa_PU4_95-168
CI=2.94


[169-206]:
1jksa_PU4_169-206
CI=2.11


[207-243]:
1jksa_PU4_207-243
CI=1.42


[244-263]:
1jksa_PU4_244-263
CI=0.57


[264-280 ]:
1jksa_PU4_264-280
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-45]:
1jksa_PU5_1-45
CI=2.75


[46-76]:
1jksa_PU5_46-76
CI=0.54


[77-94]:
1jksa_PU5_77-94
CI=2.19


[95-110]:
1jksa_PU5_95-110
CI=0.11


[111-134]:
1jksa_PU5_111-134
CI=0.00


[135-168]:
1jksa_PU5_135-168
CI=2.41


[169-206]:
1jksa_PU5_169-206
CI=2.11


[207-243]:
1jksa_PU5_207-243
CI=1.42


[244-263]:
1jksa_PU5_244-263
CI=0.57


[264-280 ]:
1jksa_PU5_264-280
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1jksa_PU6_1-19
CI=0.00


[20-45]:
1jksa_PU6_20-45
CI=2.34


[46-76]:
1jksa_PU6_46-76
CI=0.54


[77-94]:
1jksa_PU6_77-94
CI=2.19


[95-110]:
1jksa_PU6_95-110
CI=0.11


[111-134]:
1jksa_PU6_111-134
CI=0.00


[135-168]:
1jksa_PU6_135-168
CI=2.41


[169-206]:
1jksa_PU6_169-206
CI=2.11


[207-243]:
1jksa_PU6_207-243
CI=1.42


[244-263]:
1jksa_PU6_244-263
CI=0.57


[264-280 ]:
1jksa_PU6_264-280
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1jksa_PU7_1-19
CI=0.00


[20-45]:
1jksa_PU7_20-45
CI=2.34


[46-76]:
1jksa_PU7_46-76
CI=0.54


[77-94]:
1jksa_PU7_77-94
CI=2.19


[95-110]:
1jksa_PU7_95-110
CI=0.11


[111-134]:
1jksa_PU7_111-134
CI=0.00


[135-168]:
1jksa_PU7_135-168
CI=2.41


[169-190]:
1jksa_PU7_169-190
CI=0.60


[191-206]:
1jksa_PU7_191-206
CI=0.00


[207-243]:
1jksa_PU7_207-243
CI=1.42


[244-263]:
1jksa_PU7_244-263
CI=0.57


[264-280 ]:
1jksa_PU7_264-280
CI=0.22


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-19]:
1jksa_PU_1-19
CI=0.00


[20-45]:
1jksa_PU_20-45
CI=2.34


[46-76]:
1jksa_PU_46-76
CI=0.54


[77-94]:
1jksa_PU_77-94
CI=2.19


[95-110]:
1jksa_PU_95-110
CI=0.11


[111-134]:
1jksa_PU_111-134
CI=0.00


[135-152]:
1jksa_PU_135-152
CI=0.00


[153-168]:
1jksa_PU_153-168
CI=0.00


[169-190]:
1jksa_PU_169-190
CI=0.60


[191-206]:
1jksa_PU_191-206
CI=0.00


[207-243]:
1jksa_PU_207-243
CI=1.42


[244-263]:
1jksa_PU_244-263
CI=0.57


[264-280 ]:
1jksa_PU_264-280
CI=0.22