Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-155]:
1jl0a_PU0_1-155
CI=4.05


[156-309 ]:
1jl0a_PU0_156-309
CI=4.54


Level 1
PU
Molecule needs Java 1.4 Structure


[1-99]:
1jl0a_PU1_1-99
CI=3.94


[100-155]:
1jl0a_PU1_100-155
CI=2.42


[156-309 ]:
1jl0a_PU1_156-309
CI=4.54


Level 2
PU
Molecule needs Java 1.4 Structure


[1-99]:
1jl0a_PU2_1-99
CI=3.94


[100-155]:
1jl0a_PU2_100-155
CI=2.42


[156-172]:
1jl0a_PU2_156-172
CI=0.00


[173-238]:
1jl0a_PU2_173-238
CI=2.86


[239-309 ]:
1jl0a_PU2_239-309
CI=2.73


Level 3
PU
Molecule needs Java 1.4 Structure


[1-99]:
1jl0a_PU3_1-99
CI=3.94


[100-155]:
1jl0a_PU3_100-155
CI=2.42


[156-172]:
1jl0a_PU3_156-172
CI=0.00


[173-238]:
1jl0a_PU3_173-238
CI=2.86


[239-264]:
1jl0a_PU3_239-264
CI=0.35


[265-309 ]:
1jl0a_PU3_265-309
CI=3.43


Level 4
PU
Molecule needs Java 1.4 Structure


[1-26]:
1jl0a_PU4_1-26
CI=0.07


[27-60]:
1jl0a_PU4_27-60
CI=1.97


[61-99]:
1jl0a_PU4_61-99
CI=0.49


[100-155]:
1jl0a_PU4_100-155
CI=2.42


[156-172]:
1jl0a_PU4_156-172
CI=0.00


[173-238]:
1jl0a_PU4_173-238
CI=2.86


[239-264]:
1jl0a_PU4_239-264
CI=0.35


[265-309 ]:
1jl0a_PU4_265-309
CI=3.43


Level 5
PU
Molecule needs Java 1.4 Structure


[1-26]:
1jl0a_PU5_1-26
CI=0.07


[27-60]:
1jl0a_PU5_27-60
CI=1.97


[61-79]:
1jl0a_PU5_61-79
CI=0.49


[80-99]:
1jl0a_PU5_80-99
CI=0.46


[100-155]:
1jl0a_PU5_100-155
CI=2.42


[156-172]:
1jl0a_PU5_156-172
CI=0.00


[173-238]:
1jl0a_PU5_173-238
CI=2.86


[239-264]:
1jl0a_PU5_239-264
CI=0.35


[265-309 ]:
1jl0a_PU5_265-309
CI=3.43


Level 6
PU
Molecule needs Java 1.4 Structure


[1-26]:
1jl0a_PU6_1-26
CI=0.07


[27-60]:
1jl0a_PU6_27-60
CI=1.97


[61-79]:
1jl0a_PU6_61-79
CI=0.49


[80-99]:
1jl0a_PU6_80-99
CI=0.46


[100-155]:
1jl0a_PU6_100-155
CI=2.42


[156-172]:
1jl0a_PU6_156-172
CI=0.00


[173-199]:
1jl0a_PU6_173-199
CI=0.48


[200-238]:
1jl0a_PU6_200-238
CI=2.71


[239-264]:
1jl0a_PU6_239-264
CI=0.35


[265-309 ]:
1jl0a_PU6_265-309
CI=3.43


Level 7
PU
Molecule needs Java 1.4 Structure


[1-26]:
1jl0a_PU7_1-26
CI=0.07


[27-60]:
1jl0a_PU7_27-60
CI=1.97


[61-79]:
1jl0a_PU7_61-79
CI=0.49


[80-99]:
1jl0a_PU7_80-99
CI=0.46


[100-130]:
1jl0a_PU7_100-130
CI=0.49


[131-155]:
1jl0a_PU7_131-155
CI=2.35


[156-172]:
1jl0a_PU7_156-172
CI=0.00


[173-199]:
1jl0a_PU7_173-199
CI=0.48


[200-238]:
1jl0a_PU7_200-238
CI=2.71


[239-264]:
1jl0a_PU7_239-264
CI=0.35


[265-309 ]:
1jl0a_PU7_265-309
CI=3.43


Level 8
PU
Molecule needs Java 1.4 Structure


[1-26]:
1jl0a_PU8_1-26
CI=0.07


[27-60]:
1jl0a_PU8_27-60
CI=1.97


[61-79]:
1jl0a_PU8_61-79
CI=0.49


[80-99]:
1jl0a_PU8_80-99
CI=0.46


[100-130]:
1jl0a_PU8_100-130
CI=0.49


[131-155]:
1jl0a_PU8_131-155
CI=2.35


[156-172]:
1jl0a_PU8_156-172
CI=0.00


[173-199]:
1jl0a_PU8_173-199
CI=0.48


[200-222]:
1jl0a_PU8_200-222
CI=1.89


[223-238]:
1jl0a_PU8_223-238
CI=0.23


[239-264]:
1jl0a_PU8_239-264
CI=0.35


[265-309 ]:
1jl0a_PU8_265-309
CI=3.43


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-26]:
1jl0a_PU_1-26
CI=0.07


[27-60]:
1jl0a_PU_27-60
CI=1.97


[61-79]:
1jl0a_PU_61-79
CI=0.49


[80-99]:
1jl0a_PU_80-99
CI=0.46


[100-130]:
1jl0a_PU_100-130
CI=0.49


[131-155]:
1jl0a_PU_131-155
CI=2.35


[156-172]:
1jl0a_PU_156-172
CI=0.00


[173-199]:
1jl0a_PU_173-199
CI=0.48


[200-222]:
1jl0a_PU_200-222
CI=1.89


[223-238]:
1jl0a_PU_223-238
CI=0.23


[239-264]:
1jl0a_PU_239-264
CI=0.35


[265-281]:
1jl0a_PU_265-281
CI=0.11


[282-309 ]:
1jl0a_PU_282-309
CI=2.59