Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-62]:
1kafa_PU0_1-62
CI=3.32


[63-91]:
1kafa_PU0_63-91
CI=2.34


[92-108 ]:
1kafa_PU0_92-108
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1kafa_PU1_1-23
CI=0.15


[24-62]:
1kafa_PU1_24-62
CI=3.98


[63-91]:
1kafa_PU1_63-91
CI=2.34


[92-108 ]:
1kafa_PU1_92-108
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1kafa_PU_1-23
CI=0.15


[24-41]:
1kafa_PU_24-41
CI=2.79


[42-62]:
1kafa_PU_42-62
CI=2.59


[63-91]:
1kafa_PU_63-91
CI=2.34


[92-108 ]:
1kafa_PU_92-108
CI=0.00