Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-163]:
1kica_PU0_1-163
CI=4.26


[164-317 ]:
1kica_PU0_164-317
CI=3.86


Level 1
PU
Molecule needs Java 1.4 Structure


[1-163]:
1kica_PU1_1-163
CI=4.26


[164-217]:
1kica_PU1_164-217
CI=2.46


[218-247]:
1kica_PU1_218-247
CI=1.19


[248-317 ]:
1kica_PU1_248-317
CI=2.16


Level 2
PU
Molecule needs Java 1.4 Structure


[1-163]:
1kica_PU2_1-163
CI=4.26


[164-217]:
1kica_PU2_164-217
CI=2.46


[218-247]:
1kica_PU2_218-247
CI=1.19


[248-264]:
1kica_PU2_248-264
CI=0.33


[265-299]:
1kica_PU2_265-299
CI=3.07


[300-317 ]:
1kica_PU2_300-317
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-36]:
1kica_PU3_1-36
CI=2.76


[37-116]:
1kica_PU3_37-116
CI=2.38


[117-163]:
1kica_PU3_117-163
CI=2.80


[164-217]:
1kica_PU3_164-217
CI=2.46


[218-247]:
1kica_PU3_218-247
CI=1.19


[248-264]:
1kica_PU3_248-264
CI=0.33


[265-299]:
1kica_PU3_265-299
CI=3.07


[300-317 ]:
1kica_PU3_300-317
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-36]:
1kica_PU4_1-36
CI=2.76


[37-70]:
1kica_PU4_37-70
CI=1.59


[71-86]:
1kica_PU4_71-86
CI=0.00


[87-116]:
1kica_PU4_87-116
CI=0.19


[117-163]:
1kica_PU4_117-163
CI=2.80


[164-217]:
1kica_PU4_164-217
CI=2.46


[218-247]:
1kica_PU4_218-247
CI=1.19


[248-264]:
1kica_PU4_248-264
CI=0.33


[265-299]:
1kica_PU4_265-299
CI=3.07


[300-317 ]:
1kica_PU4_300-317
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-36]:
1kica_PU5_1-36
CI=2.76


[37-53]:
1kica_PU5_37-53
CI=0.53


[54-70]:
1kica_PU5_54-70
CI=1.58


[71-86]:
1kica_PU5_71-86
CI=0.00


[87-116]:
1kica_PU5_87-116
CI=0.19


[117-163]:
1kica_PU5_117-163
CI=2.80


[164-217]:
1kica_PU5_164-217
CI=2.46


[218-247]:
1kica_PU5_218-247
CI=1.19


[248-264]:
1kica_PU5_248-264
CI=0.33


[265-299]:
1kica_PU5_265-299
CI=3.07


[300-317 ]:
1kica_PU5_300-317
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-36]:
1kica_PU6_1-36
CI=2.76


[37-53]:
1kica_PU6_37-53
CI=0.53


[54-70]:
1kica_PU6_54-70
CI=1.58


[71-86]:
1kica_PU6_71-86
CI=0.00


[87-116]:
1kica_PU6_87-116
CI=0.19


[117-163]:
1kica_PU6_117-163
CI=2.80


[164-189]:
1kica_PU6_164-189
CI=2.54


[190-217]:
1kica_PU6_190-217
CI=0.13


[218-247]:
1kica_PU6_218-247
CI=1.19


[248-264]:
1kica_PU6_248-264
CI=0.33


[265-299]:
1kica_PU6_265-299
CI=3.07


[300-317 ]:
1kica_PU6_300-317
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-36]:
1kica_PU7_1-36
CI=2.76


[37-53]:
1kica_PU7_37-53
CI=0.53


[54-70]:
1kica_PU7_54-70
CI=1.58


[71-86]:
1kica_PU7_71-86
CI=0.00


[87-116]:
1kica_PU7_87-116
CI=0.19


[117-135]:
1kica_PU7_117-135
CI=0.48


[136-163]:
1kica_PU7_136-163
CI=0.61


[164-189]:
1kica_PU7_164-189
CI=2.54


[190-217]:
1kica_PU7_190-217
CI=0.13


[218-247]:
1kica_PU7_218-247
CI=1.19


[248-264]:
1kica_PU7_248-264
CI=0.33


[265-299]:
1kica_PU7_265-299
CI=3.07


[300-317 ]:
1kica_PU7_300-317
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1kica_PU8_1-19
CI=0.66


[20-36]:
1kica_PU8_20-36
CI=0.65


[37-53]:
1kica_PU8_37-53
CI=0.53


[54-70]:
1kica_PU8_54-70
CI=1.58


[71-86]:
1kica_PU8_71-86
CI=0.00


[87-116]:
1kica_PU8_87-116
CI=0.19


[117-135]:
1kica_PU8_117-135
CI=0.48


[136-163]:
1kica_PU8_136-163
CI=0.61


[164-189]:
1kica_PU8_164-189
CI=2.54


[190-217]:
1kica_PU8_190-217
CI=0.13


[218-247]:
1kica_PU8_218-247
CI=1.19


[248-264]:
1kica_PU8_248-264
CI=0.33


[265-299]:
1kica_PU8_265-299
CI=3.07


[300-317 ]:
1kica_PU8_300-317
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1kica_PU_1-19
CI=0.66


[20-36]:
1kica_PU_20-36
CI=0.65


[37-53]:
1kica_PU_37-53
CI=0.53


[54-70]:
1kica_PU_54-70
CI=1.58


[71-86]:
1kica_PU_71-86
CI=0.00


[87-116]:
1kica_PU_87-116
CI=0.19


[117-135]:
1kica_PU_117-135
CI=0.48


[136-163]:
1kica_PU_136-163
CI=0.61


[164-189]:
1kica_PU_164-189
CI=2.54


[190-217]:
1kica_PU_190-217
CI=0.13


[218-247]:
1kica_PU_218-247
CI=1.19


[248-264]:
1kica_PU_248-264
CI=0.33


[265-283]:
1kica_PU_265-283
CI=0.99


[284-299]:
1kica_PU_284-299
CI=0.00


[300-317 ]:
1kica_PU_300-317
CI=0.00