Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1lo7a_PU0_1-41
CI=0.87


[42-57]:
1lo7a_PU0_42-57
CI=1.25


[58-140 ]:
1lo7a_PU0_58-140
CI=4.03


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1lo7a_PU1_1-41
CI=0.87


[42-57]:
1lo7a_PU1_42-57
CI=1.25


[58-117]:
1lo7a_PU1_58-117
CI=4.33


[118-140 ]:
1lo7a_PU1_118-140
CI=1.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lo7a_PU2_1-22
CI=0.68


[23-41]:
1lo7a_PU2_23-41
CI=0.00


[42-57]:
1lo7a_PU2_42-57
CI=1.25


[58-117]:
1lo7a_PU2_58-117
CI=4.33


[118-140 ]:
1lo7a_PU2_118-140
CI=1.30


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-22]:
1lo7a_PU_1-22
CI=0.68


[23-41]:
1lo7a_PU_23-41
CI=0.00


[42-57]:
1lo7a_PU_42-57
CI=1.25


[58-76]:
1lo7a_PU_58-76
CI=0.00


[77-96]:
1lo7a_PU_77-96
CI=2.34


[97-117]:
1lo7a_PU_97-117
CI=1.53


[118-140 ]:
1lo7a_PU_118-140
CI=1.30