Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1lu4a_PU0_1-24
CI=2.35


[25-134 ]:
1lu4a_PU0_25-134
CI=3.85


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1lu4a_PU1_1-24
CI=2.35


[25-62]:
1lu4a_PU1_25-62
CI=1.92


[63-98]:
1lu4a_PU1_63-98
CI=1.20


[99-134 ]:
1lu4a_PU1_99-134
CI=1.79


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1lu4a_PU2_1-24
CI=2.35


[25-62]:
1lu4a_PU2_25-62
CI=1.92


[63-98]:
1lu4a_PU2_63-98
CI=1.20


[99-118]:
1lu4a_PU2_99-118
CI=2.61


[119-134 ]:
1lu4a_PU2_119-134
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-24]:
1lu4a_PU3_1-24
CI=2.35


[25-62]:
1lu4a_PU3_25-62
CI=1.92


[63-80]:
1lu4a_PU3_63-80
CI=0.29


[81-98]:
1lu4a_PU3_81-98
CI=0.20


[99-118]:
1lu4a_PU3_99-118
CI=2.61


[119-134 ]:
1lu4a_PU3_119-134
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-24]:
1lu4a_PU_1-24
CI=2.35


[25-44]:
1lu4a_PU_25-44
CI=0.28


[45-62]:
1lu4a_PU_45-62
CI=0.30


[63-80]:
1lu4a_PU_63-80
CI=0.29


[81-98]:
1lu4a_PU_81-98
CI=0.20


[99-118]:
1lu4a_PU_99-118
CI=2.61


[119-134 ]:
1lu4a_PU_119-134
CI=0.00