Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-111]:
1m6ya_PU0_1-111
CI=3.27


[112-212]:
1m6ya_PU0_112-212
CI=3.04


[213-289 ]:
1m6ya_PU0_213-289
CI=2.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m6ya_PU1_1-19
CI=0.00


[20-99]:
1m6ya_PU1_20-99
CI=3.59


[100-111]:
1m6ya_PU1_100-111
CI=0.00


[112-212]:
1m6ya_PU1_112-212
CI=3.04


[213-289 ]:
1m6ya_PU1_213-289
CI=2.69


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m6ya_PU2_1-19
CI=0.00


[20-77]:
1m6ya_PU2_20-77
CI=3.61


[78-99]:
1m6ya_PU2_78-99
CI=0.33


[100-111]:
1m6ya_PU2_100-111
CI=0.00


[112-212]:
1m6ya_PU2_112-212
CI=3.04


[213-289 ]:
1m6ya_PU2_213-289
CI=2.69


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m6ya_PU3_1-19
CI=0.00


[20-77]:
1m6ya_PU3_20-77
CI=3.61


[78-99]:
1m6ya_PU3_78-99
CI=0.33


[100-111]:
1m6ya_PU3_100-111
CI=0.00


[112-135]:
1m6ya_PU3_112-135
CI=1.95


[136-171]:
1m6ya_PU3_136-171
CI=1.10


[172-212]:
1m6ya_PU3_172-212
CI=0.73


[213-289 ]:
1m6ya_PU3_213-289
CI=2.69


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m6ya_PU4_1-19
CI=0.00


[20-77]:
1m6ya_PU4_20-77
CI=3.61


[78-99]:
1m6ya_PU4_78-99
CI=0.33


[100-111]:
1m6ya_PU4_100-111
CI=0.00


[112-135]:
1m6ya_PU4_112-135
CI=1.95


[136-171]:
1m6ya_PU4_136-171
CI=1.10


[172-196]:
1m6ya_PU4_172-196
CI=0.15


[197-212]:
1m6ya_PU4_197-212
CI=0.00


[213-289 ]:
1m6ya_PU4_213-289
CI=2.69


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m6ya_PU5_1-19
CI=0.00


[20-77]:
1m6ya_PU5_20-77
CI=3.61


[78-99]:
1m6ya_PU5_78-99
CI=0.33


[100-111]:
1m6ya_PU5_100-111
CI=0.00


[112-135]:
1m6ya_PU5_112-135
CI=1.95


[136-171]:
1m6ya_PU5_136-171
CI=1.10


[172-196]:
1m6ya_PU5_172-196
CI=0.15


[197-212]:
1m6ya_PU5_197-212
CI=0.00


[213-232]:
1m6ya_PU5_213-232
CI=0.00


[233-289 ]:
1m6ya_PU5_233-289
CI=2.75


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m6ya_PU6_1-19
CI=0.00


[20-77]:
1m6ya_PU6_20-77
CI=3.61


[78-99]:
1m6ya_PU6_78-99
CI=0.33


[100-111]:
1m6ya_PU6_100-111
CI=0.00


[112-135]:
1m6ya_PU6_112-135
CI=1.95


[136-171]:
1m6ya_PU6_136-171
CI=1.10


[172-196]:
1m6ya_PU6_172-196
CI=0.15


[197-212]:
1m6ya_PU6_197-212
CI=0.00


[213-232]:
1m6ya_PU6_213-232
CI=0.00


[233-248]:
1m6ya_PU6_233-248
CI=0.23


[249-264]:
1m6ya_PU6_249-264
CI=0.58


[265-289 ]:
1m6ya_PU6_265-289
CI=1.13


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m6ya_PU7_1-19
CI=0.00


[20-53]:
1m6ya_PU7_20-53
CI=2.96


[54-77]:
1m6ya_PU7_54-77
CI=0.69


[78-99]:
1m6ya_PU7_78-99
CI=0.33


[100-111]:
1m6ya_PU7_100-111
CI=0.00


[112-135]:
1m6ya_PU7_112-135
CI=1.95


[136-171]:
1m6ya_PU7_136-171
CI=1.10


[172-196]:
1m6ya_PU7_172-196
CI=0.15


[197-212]:
1m6ya_PU7_197-212
CI=0.00


[213-232]:
1m6ya_PU7_213-232
CI=0.00


[233-248]:
1m6ya_PU7_233-248
CI=0.23


[249-264]:
1m6ya_PU7_249-264
CI=0.58


[265-289 ]:
1m6ya_PU7_265-289
CI=1.13


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-19]:
1m6ya_PU_1-19
CI=0.00


[20-53]:
1m6ya_PU_20-53
CI=2.96


[54-77]:
1m6ya_PU_54-77
CI=0.69


[78-99]:
1m6ya_PU_78-99
CI=0.33


[100-111]:
1m6ya_PU_100-111
CI=0.00


[112-135]:
1m6ya_PU_112-135
CI=1.95


[136-155]:
1m6ya_PU_136-155
CI=0.18


[156-171]:
1m6ya_PU_156-171
CI=0.00


[172-196]:
1m6ya_PU_172-196
CI=0.15


[197-212]:
1m6ya_PU_197-212
CI=0.00


[213-232]:
1m6ya_PU_213-232
CI=0.00


[233-248]:
1m6ya_PU_233-248
CI=0.23


[249-264]:
1m6ya_PU_249-264
CI=0.58


[265-289 ]:
1m6ya_PU_265-289
CI=1.13