Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-122]:
1mla0_PU0_1-122
CI=3.26


[123-202]:
1mla0_PU0_123-202
CI=4.69


[203-305 ]:
1mla0_PU0_203-305
CI=2.23


Level 1
PU
Molecule needs Java 1.4 Structure


[1-122]:
1mla0_PU1_1-122
CI=3.26


[123-202]:
1mla0_PU1_123-202
CI=4.69


[203-254]:
1mla0_PU1_203-254
CI=2.06


[255-305 ]:
1mla0_PU1_255-305
CI=2.06


Level 2
PU
Molecule needs Java 1.4 Structure


[1-122]:
1mla0_PU2_1-122
CI=3.26


[123-202]:
1mla0_PU2_123-202
CI=4.69


[203-219]:
1mla0_PU2_203-219
CI=0.00


[220-254]:
1mla0_PU2_220-254
CI=1.96


[255-305 ]:
1mla0_PU2_255-305
CI=2.06


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mla0_PU3_1-16
CI=0.00


[17-48]:
1mla0_PU3_17-48
CI=1.12


[49-122]:
1mla0_PU3_49-122
CI=1.83


[123-202]:
1mla0_PU3_123-202
CI=4.69


[203-219]:
1mla0_PU3_203-219
CI=0.00


[220-254]:
1mla0_PU3_220-254
CI=1.96


[255-305 ]:
1mla0_PU3_255-305
CI=2.06


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mla0_PU4_1-16
CI=0.00


[17-48]:
1mla0_PU4_17-48
CI=1.12


[49-64]:
1mla0_PU4_49-64
CI=0.34


[65-108]:
1mla0_PU4_65-108
CI=1.46


[109-122]:
1mla0_PU4_109-122
CI=0.00


[123-202]:
1mla0_PU4_123-202
CI=4.69


[203-219]:
1mla0_PU4_203-219
CI=0.00


[220-254]:
1mla0_PU4_220-254
CI=1.96


[255-305 ]:
1mla0_PU4_255-305
CI=2.06


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mla0_PU5_1-16
CI=0.00


[17-48]:
1mla0_PU5_17-48
CI=1.12


[49-64]:
1mla0_PU5_49-64
CI=0.34


[65-83]:
1mla0_PU5_65-83
CI=0.09


[84-108]:
1mla0_PU5_84-108
CI=1.27


[109-122]:
1mla0_PU5_109-122
CI=0.00


[123-202]:
1mla0_PU5_123-202
CI=4.69


[203-219]:
1mla0_PU5_203-219
CI=0.00


[220-254]:
1mla0_PU5_220-254
CI=1.96


[255-305 ]:
1mla0_PU5_255-305
CI=2.06


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mla0_PU6_1-16
CI=0.00


[17-48]:
1mla0_PU6_17-48
CI=1.12


[49-64]:
1mla0_PU6_49-64
CI=0.34


[65-83]:
1mla0_PU6_65-83
CI=0.09


[84-108]:
1mla0_PU6_84-108
CI=1.27


[109-122]:
1mla0_PU6_109-122
CI=0.00


[123-202]:
1mla0_PU6_123-202
CI=4.69


[203-219]:
1mla0_PU6_203-219
CI=0.00


[220-254]:
1mla0_PU6_220-254
CI=1.96


[255-271]:
1mla0_PU6_255-271
CI=0.10


[272-305 ]:
1mla0_PU6_272-305
CI=1.62


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mla0_PU7_1-16
CI=0.00


[17-48]:
1mla0_PU7_17-48
CI=1.12


[49-64]:
1mla0_PU7_49-64
CI=0.34


[65-83]:
1mla0_PU7_65-83
CI=0.09


[84-108]:
1mla0_PU7_84-108
CI=1.27


[109-122]:
1mla0_PU7_109-122
CI=0.00


[123-202]:
1mla0_PU7_123-202
CI=4.69


[203-219]:
1mla0_PU7_203-219
CI=0.00


[220-254]:
1mla0_PU7_220-254
CI=1.96


[255-271]:
1mla0_PU7_255-271
CI=0.10


[272-289]:
1mla0_PU7_272-289
CI=0.21


[290-305 ]:
1mla0_PU7_290-305
CI=0.23


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mla0_PU8_1-16
CI=0.00


[17-48]:
1mla0_PU8_17-48
CI=1.12


[49-64]:
1mla0_PU8_49-64
CI=0.34


[65-83]:
1mla0_PU8_65-83
CI=0.09


[84-108]:
1mla0_PU8_84-108
CI=1.27


[109-122]:
1mla0_PU8_109-122
CI=0.00


[123-202]:
1mla0_PU8_123-202
CI=4.69


[203-219]:
1mla0_PU8_203-219
CI=0.00


[220-238]:
1mla0_PU8_220-238
CI=1.47


[239-254]:
1mla0_PU8_239-254
CI=0.00


[255-271]:
1mla0_PU8_255-271
CI=0.10


[272-289]:
1mla0_PU8_272-289
CI=0.21


[290-305 ]:
1mla0_PU8_290-305
CI=0.23


Level 9
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mla0_PU9_1-16
CI=0.00


[17-48]:
1mla0_PU9_17-48
CI=1.12


[49-64]:
1mla0_PU9_49-64
CI=0.34


[65-83]:
1mla0_PU9_65-83
CI=0.09


[84-108]:
1mla0_PU9_84-108
CI=1.27


[109-122]:
1mla0_PU9_109-122
CI=0.00


[123-138]:
1mla0_PU9_123-138
CI=0.00


[139-180]:
1mla0_PU9_139-180
CI=2.99


[181-202]:
1mla0_PU9_181-202
CI=0.25


[203-219]:
1mla0_PU9_203-219
CI=0.00


[220-238]:
1mla0_PU9_220-238
CI=1.47


[239-254]:
1mla0_PU9_239-254
CI=0.00


[255-271]:
1mla0_PU9_255-271
CI=0.10


[272-289]:
1mla0_PU9_272-289
CI=0.21


[290-305 ]:
1mla0_PU9_290-305
CI=0.23


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-16]:
1mla0_PU_1-16
CI=0.00


[17-48]:
1mla0_PU_17-48
CI=1.12


[49-64]:
1mla0_PU_49-64
CI=0.34


[65-83]:
1mla0_PU_65-83
CI=0.09


[84-108]:
1mla0_PU_84-108
CI=1.27


[109-122]:
1mla0_PU_109-122
CI=0.00


[123-138]:
1mla0_PU_123-138
CI=0.00


[139-160]:
1mla0_PU_139-160
CI=0.66


[161-180]:
1mla0_PU_161-180
CI=0.27


[181-202]:
1mla0_PU_181-202
CI=0.25


[203-219]:
1mla0_PU_203-219
CI=0.00


[220-238]:
1mla0_PU_220-238
CI=1.47


[239-254]:
1mla0_PU_239-254
CI=0.00


[255-271]:
1mla0_PU_255-271
CI=0.10


[272-289]:
1mla0_PU_272-289
CI=0.21


[290-305 ]:
1mla0_PU_290-305
CI=0.23