Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-161]:
1mxra_PU0_1-161
CI=2.11


[162-189]:
1mxra_PU0_162-189
CI=1.89


[190-339 ]:
1mxra_PU0_190-339
CI=1.79


Level 1
PU
Molecule needs Java 1.4 Structure


[1-161]:
1mxra_PU1_1-161
CI=2.11


[162-189]:
1mxra_PU1_162-189
CI=1.89


[190-268]:
1mxra_PU1_190-268
CI=1.40


[269-331]:
1mxra_PU1_269-331
CI=1.39


[332-339 ]:
1mxra_PU1_332-339
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-161]:
1mxra_PU2_1-161
CI=2.11


[162-189]:
1mxra_PU2_162-189
CI=1.89


[190-210]:
1mxra_PU2_190-210
CI=0.00


[211-234]:
1mxra_PU2_211-234
CI=1.01


[235-268]:
1mxra_PU2_235-268
CI=0.84


[269-331]:
1mxra_PU2_269-331
CI=1.39


[332-339 ]:
1mxra_PU2_332-339
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-161]:
1mxra_PU3_1-161
CI=2.11


[162-189]:
1mxra_PU3_162-189
CI=1.89


[190-210]:
1mxra_PU3_190-210
CI=0.00


[211-234]:
1mxra_PU3_211-234
CI=1.01


[235-251]:
1mxra_PU3_235-251
CI=0.00


[252-268]:
1mxra_PU3_252-268
CI=1.52


[269-331]:
1mxra_PU3_269-331
CI=1.39


[332-339 ]:
1mxra_PU3_332-339
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-161]:
1mxra_PU4_1-161
CI=2.11


[162-189]:
1mxra_PU4_162-189
CI=1.89


[190-210]:
1mxra_PU4_190-210
CI=0.00


[211-234]:
1mxra_PU4_211-234
CI=1.01


[235-251]:
1mxra_PU4_235-251
CI=0.00


[252-268]:
1mxra_PU4_252-268
CI=1.52


[269-284]:
1mxra_PU4_269-284
CI=0.00


[285-304]:
1mxra_PU4_285-304
CI=0.54


[305-331]:
1mxra_PU4_305-331
CI=1.53


[332-339 ]:
1mxra_PU4_332-339
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-53]:
1mxra_PU5_1-53
CI=0.86


[54-73]:
1mxra_PU5_54-73
CI=0.19


[74-161]:
1mxra_PU5_74-161
CI=1.44


[162-189]:
1mxra_PU5_162-189
CI=1.89


[190-210]:
1mxra_PU5_190-210
CI=0.00


[211-234]:
1mxra_PU5_211-234
CI=1.01


[235-251]:
1mxra_PU5_235-251
CI=0.00


[252-268]:
1mxra_PU5_252-268
CI=1.52


[269-284]:
1mxra_PU5_269-284
CI=0.00


[285-304]:
1mxra_PU5_285-304
CI=0.54


[305-331]:
1mxra_PU5_305-331
CI=1.53


[332-339 ]:
1mxra_PU5_332-339
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mxra_PU6_1-32
CI=1.29


[33-53]:
1mxra_PU6_33-53
CI=0.00


[54-73]:
1mxra_PU6_54-73
CI=0.19


[74-161]:
1mxra_PU6_74-161
CI=1.44


[162-189]:
1mxra_PU6_162-189
CI=1.89


[190-210]:
1mxra_PU6_190-210
CI=0.00


[211-234]:
1mxra_PU6_211-234
CI=1.01


[235-251]:
1mxra_PU6_235-251
CI=0.00


[252-268]:
1mxra_PU6_252-268
CI=1.52


[269-284]:
1mxra_PU6_269-284
CI=0.00


[285-304]:
1mxra_PU6_285-304
CI=0.54


[305-331]:
1mxra_PU6_305-331
CI=1.53


[332-339 ]:
1mxra_PU6_332-339
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-32]:
1mxra_PU_1-32
CI=1.29


[33-53]:
1mxra_PU_33-53
CI=0.00


[54-73]:
1mxra_PU_54-73
CI=0.19


[74-89]:
1mxra_PU_74-89
CI=0.00


[90-114]:
1mxra_PU_90-114
CI=1.12


[115-161]:
1mxra_PU_115-161
CI=0.24


[162-189]:
1mxra_PU_162-189
CI=1.89


[190-210]:
1mxra_PU_190-210
CI=0.00


[211-234]:
1mxra_PU_211-234
CI=1.01


[235-251]:
1mxra_PU_235-251
CI=0.00


[252-268]:
1mxra_PU_252-268
CI=1.52


[269-284]:
1mxra_PU_269-284
CI=0.00


[285-304]:
1mxra_PU_285-304
CI=0.54


[305-331]:
1mxra_PU_305-331
CI=1.53


[332-339 ]:
1mxra_PU_332-339
CI=0.00