Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-43]:
1njha_PU0_1-43
CI=1.84


[44-72]:
1njha_PU0_44-72
CI=3.68


[73-105 ]:
1njha_PU0_73-105
CI=2.14


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1njha_PU1_1-18
CI=0.00


[19-43]:
1njha_PU1_19-43
CI=3.03


[44-72]:
1njha_PU1_44-72
CI=3.68


[73-105 ]:
1njha_PU1_73-105
CI=2.14


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-18]:
1njha_PU_1-18
CI=0.00


[19-43]:
1njha_PU_19-43
CI=3.03


[44-72]:
1njha_PU_44-72
CI=3.68


[73-89]:
1njha_PU_73-89
CI=1.41


[90-105 ]:
1njha_PU_90-105
CI=0.00