Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-182]:
1oc7a_PU0_1-182
CI=3.12


[183-364 ]:
1oc7a_PU0_183-364
CI=4.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU1_1-25
CI=0.00


[26-43]:
1oc7a_PU1_26-43
CI=0.51


[44-182]:
1oc7a_PU1_44-182
CI=3.10


[183-364 ]:
1oc7a_PU1_183-364
CI=4.68


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU2_1-25
CI=0.00


[26-43]:
1oc7a_PU2_26-43
CI=0.51


[44-182]:
1oc7a_PU2_44-182
CI=3.10


[183-267]:
1oc7a_PU2_183-267
CI=2.83


[268-364 ]:
1oc7a_PU2_268-364
CI=4.70


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU3_1-25
CI=0.00


[26-43]:
1oc7a_PU3_26-43
CI=0.51


[44-182]:
1oc7a_PU3_44-182
CI=3.10


[183-267]:
1oc7a_PU3_183-267
CI=2.83


[268-295]:
1oc7a_PU3_268-295
CI=2.71


[296-311]:
1oc7a_PU3_296-311
CI=2.20


[312-364 ]:
1oc7a_PU3_312-364
CI=2.66


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU4_1-25
CI=0.00


[26-43]:
1oc7a_PU4_26-43
CI=0.51


[44-86]:
1oc7a_PU4_44-86
CI=1.32


[87-182]:
1oc7a_PU4_87-182
CI=2.80


[183-267]:
1oc7a_PU4_183-267
CI=2.83


[268-295]:
1oc7a_PU4_268-295
CI=2.71


[296-311]:
1oc7a_PU4_296-311
CI=2.20


[312-364 ]:
1oc7a_PU4_312-364
CI=2.66


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU5_1-25
CI=0.00


[26-43]:
1oc7a_PU5_26-43
CI=0.51


[44-86]:
1oc7a_PU5_44-86
CI=1.32


[87-182]:
1oc7a_PU5_87-182
CI=2.80


[183-267]:
1oc7a_PU5_183-267
CI=2.83


[268-295]:
1oc7a_PU5_268-295
CI=2.71


[296-311]:
1oc7a_PU5_296-311
CI=2.20


[312-348]:
1oc7a_PU5_312-348
CI=2.80


[349-364 ]:
1oc7a_PU5_349-364
CI=0.23


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU6_1-25
CI=0.00


[26-43]:
1oc7a_PU6_26-43
CI=0.51


[44-86]:
1oc7a_PU6_44-86
CI=1.32


[87-141]:
1oc7a_PU6_87-141
CI=2.11


[142-159]:
1oc7a_PU6_142-159
CI=0.72


[160-182]:
1oc7a_PU6_160-182
CI=0.24


[183-267]:
1oc7a_PU6_183-267
CI=2.83


[268-295]:
1oc7a_PU6_268-295
CI=2.71


[296-311]:
1oc7a_PU6_296-311
CI=2.20


[312-348]:
1oc7a_PU6_312-348
CI=2.80


[349-364 ]:
1oc7a_PU6_349-364
CI=0.23


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU7_1-25
CI=0.00


[26-43]:
1oc7a_PU7_26-43
CI=0.51


[44-86]:
1oc7a_PU7_44-86
CI=1.32


[87-118]:
1oc7a_PU7_87-118
CI=2.30


[119-141]:
1oc7a_PU7_119-141
CI=0.23


[142-159]:
1oc7a_PU7_142-159
CI=0.72


[160-182]:
1oc7a_PU7_160-182
CI=0.24


[183-267]:
1oc7a_PU7_183-267
CI=2.83


[268-295]:
1oc7a_PU7_268-295
CI=2.71


[296-311]:
1oc7a_PU7_296-311
CI=2.20


[312-348]:
1oc7a_PU7_312-348
CI=2.80


[349-364 ]:
1oc7a_PU7_349-364
CI=0.23


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU8_1-25
CI=0.00


[26-43]:
1oc7a_PU8_26-43
CI=0.51


[44-86]:
1oc7a_PU8_44-86
CI=1.32


[87-118]:
1oc7a_PU8_87-118
CI=2.30


[119-141]:
1oc7a_PU8_119-141
CI=0.23


[142-159]:
1oc7a_PU8_142-159
CI=0.72


[160-182]:
1oc7a_PU8_160-182
CI=0.24


[183-225]:
1oc7a_PU8_183-225
CI=1.05


[226-247]:
1oc7a_PU8_226-247
CI=1.62


[248-267]:
1oc7a_PU8_248-267
CI=0.65


[268-295]:
1oc7a_PU8_268-295
CI=2.71


[296-311]:
1oc7a_PU8_296-311
CI=2.20


[312-348]:
1oc7a_PU8_312-348
CI=2.80


[349-364 ]:
1oc7a_PU8_349-364
CI=0.23


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1oc7a_PU_1-25
CI=0.00


[26-43]:
1oc7a_PU_26-43
CI=0.51


[44-86]:
1oc7a_PU_44-86
CI=1.32


[87-118]:
1oc7a_PU_87-118
CI=2.30


[119-141]:
1oc7a_PU_119-141
CI=0.23


[142-159]:
1oc7a_PU_142-159
CI=0.72


[160-182]:
1oc7a_PU_160-182
CI=0.24


[183-201]:
1oc7a_PU_183-201
CI=0.67


[202-225]:
1oc7a_PU_202-225
CI=0.22


[226-247]:
1oc7a_PU_226-247
CI=1.62


[248-267]:
1oc7a_PU_248-267
CI=0.65


[268-295]:
1oc7a_PU_268-295
CI=2.71


[296-311]:
1oc7a_PU_296-311
CI=2.20


[312-348]:
1oc7a_PU_312-348
CI=2.80


[349-364 ]:
1oc7a_PU_349-364
CI=0.23