Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU0_1-46
CI=2.11


[47-146]:
1odma_PU0_47-146
CI=2.48


[147-329 ]:
1odma_PU0_147-329
CI=4.26


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU1_1-46
CI=2.11


[47-62]:
1odma_PU1_47-62
CI=0.00


[63-128]:
1odma_PU1_63-128
CI=3.11


[129-146]:
1odma_PU1_129-146
CI=0.20


[147-329 ]:
1odma_PU1_147-329
CI=4.26


Level 2
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU2_1-46
CI=2.11


[47-62]:
1odma_PU2_47-62
CI=0.00


[63-128]:
1odma_PU2_63-128
CI=3.11


[129-146]:
1odma_PU2_129-146
CI=0.20


[147-179]:
1odma_PU2_147-179
CI=1.43


[180-284]:
1odma_PU2_180-284
CI=4.79


[285-329 ]:
1odma_PU2_285-329
CI=1.62


Level 3
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU3_1-46
CI=2.11


[47-62]:
1odma_PU3_47-62
CI=0.00


[63-128]:
1odma_PU3_63-128
CI=3.11


[129-146]:
1odma_PU3_129-146
CI=0.20


[147-179]:
1odma_PU3_147-179
CI=1.43


[180-284]:
1odma_PU3_180-284
CI=4.79


[285-313]:
1odma_PU3_285-313
CI=2.23


[314-329 ]:
1odma_PU3_314-329
CI=0.11


Level 4
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU4_1-46
CI=2.11


[47-62]:
1odma_PU4_47-62
CI=0.00


[63-102]:
1odma_PU4_63-102
CI=2.91


[103-128]:
1odma_PU4_103-128
CI=1.65


[129-146]:
1odma_PU4_129-146
CI=0.20


[147-179]:
1odma_PU4_147-179
CI=1.43


[180-284]:
1odma_PU4_180-284
CI=4.79


[285-313]:
1odma_PU4_285-313
CI=2.23


[314-329 ]:
1odma_PU4_314-329
CI=0.11


Level 5
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU5_1-46
CI=2.11


[47-62]:
1odma_PU5_47-62
CI=0.00


[63-102]:
1odma_PU5_63-102
CI=2.91


[103-128]:
1odma_PU5_103-128
CI=1.65


[129-146]:
1odma_PU5_129-146
CI=0.20


[147-179]:
1odma_PU5_147-179
CI=1.43


[180-212]:
1odma_PU5_180-212
CI=0.85


[213-270]:
1odma_PU5_213-270
CI=4.13


[271-284]:
1odma_PU5_271-284
CI=0.00


[285-313]:
1odma_PU5_285-313
CI=2.23


[314-329 ]:
1odma_PU5_314-329
CI=0.11


Level 6
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU6_1-46
CI=2.11


[47-62]:
1odma_PU6_47-62
CI=0.00


[63-102]:
1odma_PU6_63-102
CI=2.91


[103-128]:
1odma_PU6_103-128
CI=1.65


[129-146]:
1odma_PU6_129-146
CI=0.20


[147-179]:
1odma_PU6_147-179
CI=1.43


[180-196]:
1odma_PU6_180-196
CI=0.00


[197-212]:
1odma_PU6_197-212
CI=1.71


[213-270]:
1odma_PU6_213-270
CI=4.13


[271-284]:
1odma_PU6_271-284
CI=0.00


[285-313]:
1odma_PU6_285-313
CI=2.23


[314-329 ]:
1odma_PU6_314-329
CI=0.11


Level 7
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU7_1-46
CI=2.11


[47-62]:
1odma_PU7_47-62
CI=0.00


[63-85]:
1odma_PU7_63-85
CI=1.54


[86-102]:
1odma_PU7_86-102
CI=2.28


[103-128]:
1odma_PU7_103-128
CI=1.65


[129-146]:
1odma_PU7_129-146
CI=0.20


[147-179]:
1odma_PU7_147-179
CI=1.43


[180-196]:
1odma_PU7_180-196
CI=0.00


[197-212]:
1odma_PU7_197-212
CI=1.71


[213-270]:
1odma_PU7_213-270
CI=4.13


[271-284]:
1odma_PU7_271-284
CI=0.00


[285-313]:
1odma_PU7_285-313
CI=2.23


[314-329 ]:
1odma_PU7_314-329
CI=0.11


Level 8
PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU8_1-46
CI=2.11


[47-62]:
1odma_PU8_47-62
CI=0.00


[63-85]:
1odma_PU8_63-85
CI=1.54


[86-102]:
1odma_PU8_86-102
CI=2.28


[103-128]:
1odma_PU8_103-128
CI=1.65


[129-146]:
1odma_PU8_129-146
CI=0.20


[147-179]:
1odma_PU8_147-179
CI=1.43


[180-196]:
1odma_PU8_180-196
CI=0.00


[197-212]:
1odma_PU8_197-212
CI=1.71


[213-250]:
1odma_PU8_213-250
CI=2.78


[251-270]:
1odma_PU8_251-270
CI=1.95


[271-284]:
1odma_PU8_271-284
CI=0.00


[285-313]:
1odma_PU8_285-313
CI=2.23


[314-329 ]:
1odma_PU8_314-329
CI=0.11


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-46]:
1odma_PU_1-46
CI=2.11


[47-62]:
1odma_PU_47-62
CI=0.00


[63-85]:
1odma_PU_63-85
CI=1.54


[86-102]:
1odma_PU_86-102
CI=2.28


[103-128]:
1odma_PU_103-128
CI=1.65


[129-146]:
1odma_PU_129-146
CI=0.20


[147-163]:
1odma_PU_147-163
CI=0.00


[164-179]:
1odma_PU_164-179
CI=0.22


[180-196]:
1odma_PU_180-196
CI=0.00


[197-212]:
1odma_PU_197-212
CI=1.71


[213-250]:
1odma_PU_213-250
CI=2.78


[251-270]:
1odma_PU_251-270
CI=1.95


[271-284]:
1odma_PU_271-284
CI=0.00


[285-313]:
1odma_PU_285-313
CI=2.23


[314-329 ]:
1odma_PU_314-329
CI=0.11