Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ogia_PU0_1-130
CI=4.80


[131-295 ]:
1ogia_PU0_131-295
CI=3.87


Level 1
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ogia_PU1_1-130
CI=4.80


[131-154]:
1ogia_PU1_131-154
CI=0.76


[155-234]:
1ogia_PU1_155-234
CI=2.72


[235-295 ]:
1ogia_PU1_235-295
CI=2.31


Level 2
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ogia_PU2_1-130
CI=4.80


[131-154]:
1ogia_PU2_131-154
CI=0.76


[155-176]:
1ogia_PU2_155-176
CI=1.34


[177-234]:
1ogia_PU2_177-234
CI=2.89


[235-295 ]:
1ogia_PU2_235-295
CI=2.31


Level 3
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ogia_PU3_1-130
CI=4.80


[131-154]:
1ogia_PU3_131-154
CI=0.76


[155-176]:
1ogia_PU3_155-176
CI=1.34


[177-213]:
1ogia_PU3_177-213
CI=1.92


[214-234]:
1ogia_PU3_214-234
CI=1.60


[235-295 ]:
1ogia_PU3_235-295
CI=2.31


Level 4
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ogia_PU4_1-130
CI=4.80


[131-154]:
1ogia_PU4_131-154
CI=0.76


[155-176]:
1ogia_PU4_155-176
CI=1.34


[177-213]:
1ogia_PU4_177-213
CI=1.92


[214-234]:
1ogia_PU4_214-234
CI=1.60


[235-254]:
1ogia_PU4_235-254
CI=0.19


[255-278]:
1ogia_PU4_255-278
CI=0.93


[279-295 ]:
1ogia_PU4_279-295
CI=0.64


Level 5
PU
Molecule needs Java 1.4 Structure


[1-46]:
1ogia_PU5_1-46
CI=2.13


[47-113]:
1ogia_PU5_47-113
CI=3.14


[114-130]:
1ogia_PU5_114-130
CI=0.00


[131-154]:
1ogia_PU5_131-154
CI=0.76


[155-176]:
1ogia_PU5_155-176
CI=1.34


[177-213]:
1ogia_PU5_177-213
CI=1.92


[214-234]:
1ogia_PU5_214-234
CI=1.60


[235-254]:
1ogia_PU5_235-254
CI=0.19


[255-278]:
1ogia_PU5_255-278
CI=0.93


[279-295 ]:
1ogia_PU5_279-295
CI=0.64


Level 6
PU
Molecule needs Java 1.4 Structure


[1-46]:
1ogia_PU6_1-46
CI=2.13


[47-91]:
1ogia_PU6_47-91
CI=3.07


[92-113]:
1ogia_PU6_92-113
CI=2.46


[114-130]:
1ogia_PU6_114-130
CI=0.00


[131-154]:
1ogia_PU6_131-154
CI=0.76


[155-176]:
1ogia_PU6_155-176
CI=1.34


[177-213]:
1ogia_PU6_177-213
CI=1.92


[214-234]:
1ogia_PU6_214-234
CI=1.60


[235-254]:
1ogia_PU6_235-254
CI=0.19


[255-278]:
1ogia_PU6_255-278
CI=0.93


[279-295 ]:
1ogia_PU6_279-295
CI=0.64


Level 7
PU
Molecule needs Java 1.4 Structure


[1-46]:
1ogia_PU7_1-46
CI=2.13


[47-73]:
1ogia_PU7_47-73
CI=2.54


[74-91]:
1ogia_PU7_74-91
CI=1.95


[92-113]:
1ogia_PU7_92-113
CI=2.46


[114-130]:
1ogia_PU7_114-130
CI=0.00


[131-154]:
1ogia_PU7_131-154
CI=0.76


[155-176]:
1ogia_PU7_155-176
CI=1.34


[177-213]:
1ogia_PU7_177-213
CI=1.92


[214-234]:
1ogia_PU7_214-234
CI=1.60


[235-254]:
1ogia_PU7_235-254
CI=0.19


[255-278]:
1ogia_PU7_255-278
CI=0.93


[279-295 ]:
1ogia_PU7_279-295
CI=0.64


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ogia_PU8_1-17
CI=0.11


[18-46]:
1ogia_PU8_18-46
CI=1.71


[47-73]:
1ogia_PU8_47-73
CI=2.54


[74-91]:
1ogia_PU8_74-91
CI=1.95


[92-113]:
1ogia_PU8_92-113
CI=2.46


[114-130]:
1ogia_PU8_114-130
CI=0.00


[131-154]:
1ogia_PU8_131-154
CI=0.76


[155-176]:
1ogia_PU8_155-176
CI=1.34


[177-213]:
1ogia_PU8_177-213
CI=1.92


[214-234]:
1ogia_PU8_214-234
CI=1.60


[235-254]:
1ogia_PU8_235-254
CI=0.19


[255-278]:
1ogia_PU8_255-278
CI=0.93


[279-295 ]:
1ogia_PU8_279-295
CI=0.64


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ogia_PU_1-17
CI=0.11


[18-46]:
1ogia_PU_18-46
CI=1.71


[47-73]:
1ogia_PU_47-73
CI=2.54


[74-91]:
1ogia_PU_74-91
CI=1.95


[92-113]:
1ogia_PU_92-113
CI=2.46


[114-130]:
1ogia_PU_114-130
CI=0.00


[131-154]:
1ogia_PU_131-154
CI=0.76


[155-176]:
1ogia_PU_155-176
CI=1.34


[177-194]:
1ogia_PU_177-194
CI=0.10


[195-213]:
1ogia_PU_195-213
CI=0.69


[214-234]:
1ogia_PU_214-234
CI=1.60


[235-254]:
1ogia_PU_235-254
CI=0.19


[255-278]:
1ogia_PU_255-278
CI=0.93


[279-295 ]:
1ogia_PU_279-295
CI=0.64