Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-32]:
1oj6a_PU0_1-32
CI=0.17


[33-62]:
1oj6a_PU0_33-62
CI=1.00


[63-147 ]:
1oj6a_PU0_63-147
CI=1.66


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1oj6a_PU1_1-32
CI=0.17


[33-62]:
1oj6a_PU1_33-62
CI=1.00


[63-101]:
1oj6a_PU1_63-101
CI=0.38


[102-133]:
1oj6a_PU1_102-133
CI=0.52


[134-147 ]:
1oj6a_PU1_134-147
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-32]:
1oj6a_PU_1-32
CI=0.17


[33-62]:
1oj6a_PU_33-62
CI=1.00


[63-80]:
1oj6a_PU_63-80
CI=0.10


[81-101]:
1oj6a_PU_81-101
CI=0.35


[102-133]:
1oj6a_PU_102-133
CI=0.52


[134-147 ]:
1oj6a_PU_134-147
CI=0.00