Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-61]:
1oqja_PU0_1-61
CI=3.98


[62-90 ]:
1oqja_PU0_62-90
CI=0.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1oqja_PU1_1-39
CI=2.95


[40-61]:
1oqja_PU1_40-61
CI=1.43


[62-90 ]:
1oqja_PU1_62-90
CI=0.64


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1oqja_PU_1-20
CI=2.44


[21-39]:
1oqja_PU_21-39
CI=1.67


[40-61]:
1oqja_PU_40-61
CI=1.43


[62-90 ]:
1oqja_PU_62-90
CI=0.64