Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU0_1-19
CI=1.58


[20-159]:
1pwma_PU0_20-159
CI=3.66


[160-316 ]:
1pwma_PU0_160-316
CI=2.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU1_1-19
CI=1.58


[20-159]:
1pwma_PU1_20-159
CI=3.66


[160-180]:
1pwma_PU1_160-180
CI=0.52


[181-299]:
1pwma_PU1_181-299
CI=2.81


[300-316 ]:
1pwma_PU1_300-316
CI=0.64


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU2_1-19
CI=1.58


[20-72]:
1pwma_PU2_20-72
CI=1.66


[73-159]:
1pwma_PU2_73-159
CI=3.80


[160-180]:
1pwma_PU2_160-180
CI=0.52


[181-299]:
1pwma_PU2_181-299
CI=2.81


[300-316 ]:
1pwma_PU2_300-316
CI=0.64


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU3_1-19
CI=1.58


[20-72]:
1pwma_PU3_20-72
CI=1.66


[73-115]:
1pwma_PU3_73-115
CI=2.30


[116-134]:
1pwma_PU3_116-134
CI=1.86


[135-159]:
1pwma_PU3_135-159
CI=0.45


[160-180]:
1pwma_PU3_160-180
CI=0.52


[181-299]:
1pwma_PU3_181-299
CI=2.81


[300-316 ]:
1pwma_PU3_300-316
CI=0.64


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU4_1-19
CI=1.58


[20-72]:
1pwma_PU4_20-72
CI=1.66


[73-115]:
1pwma_PU4_73-115
CI=2.30


[116-134]:
1pwma_PU4_116-134
CI=1.86


[135-159]:
1pwma_PU4_135-159
CI=0.45


[160-180]:
1pwma_PU4_160-180
CI=0.52


[181-230]:
1pwma_PU4_181-230
CI=2.37


[231-289]:
1pwma_PU4_231-289
CI=1.04


[290-299]:
1pwma_PU4_290-299
CI=0.00


[300-316 ]:
1pwma_PU4_300-316
CI=0.64


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU5_1-19
CI=1.58


[20-72]:
1pwma_PU5_20-72
CI=1.66


[73-115]:
1pwma_PU5_73-115
CI=2.30


[116-134]:
1pwma_PU5_116-134
CI=1.86


[135-159]:
1pwma_PU5_135-159
CI=0.45


[160-180]:
1pwma_PU5_160-180
CI=0.52


[181-212]:
1pwma_PU5_181-212
CI=2.61


[213-230]:
1pwma_PU5_213-230
CI=0.61


[231-289]:
1pwma_PU5_231-289
CI=1.04


[290-299]:
1pwma_PU5_290-299
CI=0.00


[300-316 ]:
1pwma_PU5_300-316
CI=0.64


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU6_1-19
CI=1.58


[20-72]:
1pwma_PU6_20-72
CI=1.66


[73-115]:
1pwma_PU6_73-115
CI=2.30


[116-134]:
1pwma_PU6_116-134
CI=1.86


[135-159]:
1pwma_PU6_135-159
CI=0.45


[160-180]:
1pwma_PU6_160-180
CI=0.52


[181-212]:
1pwma_PU6_181-212
CI=2.61


[213-230]:
1pwma_PU6_213-230
CI=0.61


[231-248]:
1pwma_PU6_231-248
CI=1.13


[249-278]:
1pwma_PU6_249-278
CI=0.69


[279-289]:
1pwma_PU6_279-289
CI=0.00


[290-299]:
1pwma_PU6_290-299
CI=0.00


[300-316 ]:
1pwma_PU6_300-316
CI=0.64


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU7_1-19
CI=1.58


[20-56]:
1pwma_PU7_20-56
CI=1.48


[57-72]:
1pwma_PU7_57-72
CI=0.35


[73-115]:
1pwma_PU7_73-115
CI=2.30


[116-134]:
1pwma_PU7_116-134
CI=1.86


[135-159]:
1pwma_PU7_135-159
CI=0.45


[160-180]:
1pwma_PU7_160-180
CI=0.52


[181-212]:
1pwma_PU7_181-212
CI=2.61


[213-230]:
1pwma_PU7_213-230
CI=0.61


[231-248]:
1pwma_PU7_231-248
CI=1.13


[249-278]:
1pwma_PU7_249-278
CI=0.69


[279-289]:
1pwma_PU7_279-289
CI=0.00


[290-299]:
1pwma_PU7_290-299
CI=0.00


[300-316 ]:
1pwma_PU7_300-316
CI=0.64


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-19]:
1pwma_PU_1-19
CI=1.58


[20-40]:
1pwma_PU_20-40
CI=0.17


[41-56]:
1pwma_PU_41-56
CI=0.23


[57-72]:
1pwma_PU_57-72
CI=0.35


[73-115]:
1pwma_PU_73-115
CI=2.30


[116-134]:
1pwma_PU_116-134
CI=1.86


[135-159]:
1pwma_PU_135-159
CI=0.45


[160-180]:
1pwma_PU_160-180
CI=0.52


[181-212]:
1pwma_PU_181-212
CI=2.61


[213-230]:
1pwma_PU_213-230
CI=0.61


[231-248]:
1pwma_PU_231-248
CI=1.13


[249-278]:
1pwma_PU_249-278
CI=0.69


[279-289]:
1pwma_PU_279-289
CI=0.00


[290-299]:
1pwma_PU_290-299
CI=0.00


[300-316 ]:
1pwma_PU_300-316
CI=0.64