Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-210]:
1qcxa_PU0_1-210
CI=6.33


[211-351]:
1qcxa_PU0_211-351
CI=6.21


[352-359 ]:
1qcxa_PU0_352-359
CI=0.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-55]:
1qcxa_PU1_1-55
CI=1.77


[56-96]:
1qcxa_PU1_56-96
CI=2.72


[97-210]:
1qcxa_PU1_97-210
CI=6.40


[211-351]:
1qcxa_PU1_211-351
CI=6.21


[352-359 ]:
1qcxa_PU1_352-359
CI=0.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU2_1-17
CI=0.54


[18-55]:
1qcxa_PU2_18-55
CI=1.70


[56-96]:
1qcxa_PU2_56-96
CI=2.72


[97-210]:
1qcxa_PU2_97-210
CI=6.40


[211-351]:
1qcxa_PU2_211-351
CI=6.21


[352-359 ]:
1qcxa_PU2_352-359
CI=0.22


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU3_1-17
CI=0.54


[18-55]:
1qcxa_PU3_18-55
CI=1.70


[56-96]:
1qcxa_PU3_56-96
CI=2.72


[97-210]:
1qcxa_PU3_97-210
CI=6.40


[211-292]:
1qcxa_PU3_211-292
CI=6.63


[293-338]:
1qcxa_PU3_293-338
CI=2.16


[339-351]:
1qcxa_PU3_339-351
CI=0.00


[352-359 ]:
1qcxa_PU3_352-359
CI=0.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU4_1-17
CI=0.54


[18-55]:
1qcxa_PU4_18-55
CI=1.70


[56-96]:
1qcxa_PU4_56-96
CI=2.72


[97-193]:
1qcxa_PU4_97-193
CI=6.49


[194-210]:
1qcxa_PU4_194-210
CI=1.54


[211-292]:
1qcxa_PU4_211-292
CI=6.63


[293-338]:
1qcxa_PU4_293-338
CI=2.16


[339-351]:
1qcxa_PU4_339-351
CI=0.00


[352-359 ]:
1qcxa_PU4_352-359
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU5_1-17
CI=0.54


[18-55]:
1qcxa_PU5_18-55
CI=1.70


[56-96]:
1qcxa_PU5_56-96
CI=2.72


[97-193]:
1qcxa_PU5_97-193
CI=6.49


[194-210]:
1qcxa_PU5_194-210
CI=1.54


[211-292]:
1qcxa_PU5_211-292
CI=6.63


[293-313]:
1qcxa_PU5_293-313
CI=2.05


[314-338]:
1qcxa_PU5_314-338
CI=0.07


[339-351]:
1qcxa_PU5_339-351
CI=0.00


[352-359 ]:
1qcxa_PU5_352-359
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU6_1-17
CI=0.54


[18-55]:
1qcxa_PU6_18-55
CI=1.70


[56-96]:
1qcxa_PU6_56-96
CI=2.72


[97-144]:
1qcxa_PU6_97-144
CI=3.64


[145-193]:
1qcxa_PU6_145-193
CI=4.24


[194-210]:
1qcxa_PU6_194-210
CI=1.54


[211-292]:
1qcxa_PU6_211-292
CI=6.63


[293-313]:
1qcxa_PU6_293-313
CI=2.05


[314-338]:
1qcxa_PU6_314-338
CI=0.07


[339-351]:
1qcxa_PU6_339-351
CI=0.00


[352-359 ]:
1qcxa_PU6_352-359
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU7_1-17
CI=0.54


[18-55]:
1qcxa_PU7_18-55
CI=1.70


[56-96]:
1qcxa_PU7_56-96
CI=2.72


[97-144]:
1qcxa_PU7_97-144
CI=3.64


[145-193]:
1qcxa_PU7_145-193
CI=4.24


[194-210]:
1qcxa_PU7_194-210
CI=1.54


[211-252]:
1qcxa_PU7_211-252
CI=4.39


[253-292]:
1qcxa_PU7_253-292
CI=3.46


[293-313]:
1qcxa_PU7_293-313
CI=2.05


[314-338]:
1qcxa_PU7_314-338
CI=0.07


[339-351]:
1qcxa_PU7_339-351
CI=0.00


[352-359 ]:
1qcxa_PU7_352-359
CI=0.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU8_1-17
CI=0.54


[18-39]:
1qcxa_PU8_18-39
CI=0.17


[40-55]:
1qcxa_PU8_40-55
CI=0.00


[56-96]:
1qcxa_PU8_56-96
CI=2.72


[97-144]:
1qcxa_PU8_97-144
CI=3.64


[145-193]:
1qcxa_PU8_145-193
CI=4.24


[194-210]:
1qcxa_PU8_194-210
CI=1.54


[211-252]:
1qcxa_PU8_211-252
CI=4.39


[253-292]:
1qcxa_PU8_253-292
CI=3.46


[293-313]:
1qcxa_PU8_293-313
CI=2.05


[314-338]:
1qcxa_PU8_314-338
CI=0.07


[339-351]:
1qcxa_PU8_339-351
CI=0.00


[352-359 ]:
1qcxa_PU8_352-359
CI=0.22


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU9_1-17
CI=0.54


[18-39]:
1qcxa_PU9_18-39
CI=0.17


[40-55]:
1qcxa_PU9_40-55
CI=0.00


[56-75]:
1qcxa_PU9_56-75
CI=1.30


[76-96]:
1qcxa_PU9_76-96
CI=0.26


[97-144]:
1qcxa_PU9_97-144
CI=3.64


[145-193]:
1qcxa_PU9_145-193
CI=4.24


[194-210]:
1qcxa_PU9_194-210
CI=1.54


[211-252]:
1qcxa_PU9_211-252
CI=4.39


[253-292]:
1qcxa_PU9_253-292
CI=3.46


[293-313]:
1qcxa_PU9_293-313
CI=2.05


[314-338]:
1qcxa_PU9_314-338
CI=0.07


[339-351]:
1qcxa_PU9_339-351
CI=0.00


[352-359 ]:
1qcxa_PU9_352-359
CI=0.22


Level 10
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU10_1-17
CI=0.54


[18-39]:
1qcxa_PU10_18-39
CI=0.17


[40-55]:
1qcxa_PU10_40-55
CI=0.00


[56-75]:
1qcxa_PU10_56-75
CI=1.30


[76-96]:
1qcxa_PU10_76-96
CI=0.26


[97-144]:
1qcxa_PU10_97-144
CI=3.64


[145-177]:
1qcxa_PU10_145-177
CI=2.47


[178-193]:
1qcxa_PU10_178-193
CI=0.21


[194-210]:
1qcxa_PU10_194-210
CI=1.54


[211-252]:
1qcxa_PU10_211-252
CI=4.39


[253-292]:
1qcxa_PU10_253-292
CI=3.46


[293-313]:
1qcxa_PU10_293-313
CI=2.05


[314-338]:
1qcxa_PU10_314-338
CI=0.07


[339-351]:
1qcxa_PU10_339-351
CI=0.00


[352-359 ]:
1qcxa_PU10_352-359
CI=0.22


Level 11
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU11_1-17
CI=0.54


[18-39]:
1qcxa_PU11_18-39
CI=0.17


[40-55]:
1qcxa_PU11_40-55
CI=0.00


[56-75]:
1qcxa_PU11_56-75
CI=1.30


[76-96]:
1qcxa_PU11_76-96
CI=0.26


[97-144]:
1qcxa_PU11_97-144
CI=3.64


[145-161]:
1qcxa_PU11_145-161
CI=0.65


[162-177]:
1qcxa_PU11_162-177
CI=0.00


[178-193]:
1qcxa_PU11_178-193
CI=0.21


[194-210]:
1qcxa_PU11_194-210
CI=1.54


[211-252]:
1qcxa_PU11_211-252
CI=4.39


[253-292]:
1qcxa_PU11_253-292
CI=3.46


[293-313]:
1qcxa_PU11_293-313
CI=2.05


[314-338]:
1qcxa_PU11_314-338
CI=0.07


[339-351]:
1qcxa_PU11_339-351
CI=0.00


[352-359 ]:
1qcxa_PU11_352-359
CI=0.22


Level 12
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU12_1-17
CI=0.54


[18-39]:
1qcxa_PU12_18-39
CI=0.17


[40-55]:
1qcxa_PU12_40-55
CI=0.00


[56-75]:
1qcxa_PU12_56-75
CI=1.30


[76-96]:
1qcxa_PU12_76-96
CI=0.26


[97-113]:
1qcxa_PU12_97-113
CI=0.00


[114-144]:
1qcxa_PU12_114-144
CI=1.95


[145-161]:
1qcxa_PU12_145-161
CI=0.65


[162-177]:
1qcxa_PU12_162-177
CI=0.00


[178-193]:
1qcxa_PU12_178-193
CI=0.21


[194-210]:
1qcxa_PU12_194-210
CI=1.54


[211-252]:
1qcxa_PU12_211-252
CI=4.39


[253-292]:
1qcxa_PU12_253-292
CI=3.46


[293-313]:
1qcxa_PU12_293-313
CI=2.05


[314-338]:
1qcxa_PU12_314-338
CI=0.07


[339-351]:
1qcxa_PU12_339-351
CI=0.00


[352-359 ]:
1qcxa_PU12_352-359
CI=0.22


Level 13
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU13_1-17
CI=0.54


[18-39]:
1qcxa_PU13_18-39
CI=0.17


[40-55]:
1qcxa_PU13_40-55
CI=0.00


[56-75]:
1qcxa_PU13_56-75
CI=1.30


[76-96]:
1qcxa_PU13_76-96
CI=0.26


[97-113]:
1qcxa_PU13_97-113
CI=0.00


[114-144]:
1qcxa_PU13_114-144
CI=1.95


[145-161]:
1qcxa_PU13_145-161
CI=0.65


[162-177]:
1qcxa_PU13_162-177
CI=0.00


[178-193]:
1qcxa_PU13_178-193
CI=0.21


[194-210]:
1qcxa_PU13_194-210
CI=1.54


[211-252]:
1qcxa_PU13_211-252
CI=4.39


[253-271]:
1qcxa_PU13_253-271
CI=0.19


[272-292]:
1qcxa_PU13_272-292
CI=0.09


[293-313]:
1qcxa_PU13_293-313
CI=2.05


[314-338]:
1qcxa_PU13_314-338
CI=0.07


[339-351]:
1qcxa_PU13_339-351
CI=0.00


[352-359 ]:
1qcxa_PU13_352-359
CI=0.22


Final level 14

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qcxa_PU_1-17
CI=0.54


[18-39]:
1qcxa_PU_18-39
CI=0.17


[40-55]:
1qcxa_PU_40-55
CI=0.00


[56-75]:
1qcxa_PU_56-75
CI=1.30


[76-96]:
1qcxa_PU_76-96
CI=0.26


[97-113]:
1qcxa_PU_97-113
CI=0.00


[114-144]:
1qcxa_PU_114-144
CI=1.95


[145-161]:
1qcxa_PU_145-161
CI=0.65


[162-177]:
1qcxa_PU_162-177
CI=0.00


[178-193]:
1qcxa_PU_178-193
CI=0.21


[194-210]:
1qcxa_PU_194-210
CI=1.54


[211-236]:
1qcxa_PU_211-236
CI=1.09


[237-252]:
1qcxa_PU_237-252
CI=0.11


[253-271]:
1qcxa_PU_253-271
CI=0.19


[272-292]:
1qcxa_PU_272-292
CI=0.09


[293-313]:
1qcxa_PU_293-313
CI=2.05


[314-338]:
1qcxa_PU_314-338
CI=0.07


[339-351]:
1qcxa_PU_339-351
CI=0.00


[352-359 ]:
1qcxa_PU_352-359
CI=0.22