Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qdda_PU0_1-17
CI=0.00


[18-144 ]:
1qdda_PU0_18-144
CI=4.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qdda_PU1_1-17
CI=0.00


[18-51]:
1qdda_PU1_18-51
CI=1.33


[52-132]:
1qdda_PU1_52-132
CI=3.58


[133-144 ]:
1qdda_PU1_133-144
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qdda_PU2_1-17
CI=0.00


[18-34]:
1qdda_PU2_18-34
CI=0.88


[35-51]:
1qdda_PU2_35-51
CI=1.51


[52-132]:
1qdda_PU2_52-132
CI=3.58


[133-144 ]:
1qdda_PU2_133-144
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qdda_PU3_1-17
CI=0.00


[18-34]:
1qdda_PU3_18-34
CI=0.88


[35-51]:
1qdda_PU3_35-51
CI=1.51


[52-73]:
1qdda_PU3_52-73
CI=0.24


[74-132]:
1qdda_PU3_74-132
CI=3.76


[133-144 ]:
1qdda_PU3_133-144
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qdda_PU_1-17
CI=0.00


[18-34]:
1qdda_PU_18-34
CI=0.88


[35-51]:
1qdda_PU_35-51
CI=1.51


[52-73]:
1qdda_PU_52-73
CI=0.24


[74-100]:
1qdda_PU_74-100
CI=1.48


[101-132]:
1qdda_PU_101-132
CI=3.10


[133-144 ]:
1qdda_PU_133-144
CI=0.00