Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-163]:
1qq9a_PU0_1-163
CI=4.36


[164-244]:
1qq9a_PU0_164-244
CI=3.50


[245-277 ]:
1qq9a_PU0_245-277
CI=0.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-163]:
1qq9a_PU1_1-163
CI=4.36


[164-244]:
1qq9a_PU1_164-244
CI=3.50


[245-261]:
1qq9a_PU1_245-261
CI=0.32


[262-277 ]:
1qq9a_PU1_262-277
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-163]:
1qq9a_PU2_1-163
CI=4.36


[164-221]:
1qq9a_PU2_164-221
CI=2.81


[222-244]:
1qq9a_PU2_222-244
CI=2.70


[245-261]:
1qq9a_PU2_245-261
CI=0.32


[262-277 ]:
1qq9a_PU2_262-277
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-40]:
1qq9a_PU3_1-40
CI=1.36


[41-163]:
1qq9a_PU3_41-163
CI=4.32


[164-221]:
1qq9a_PU3_164-221
CI=2.81


[222-244]:
1qq9a_PU3_222-244
CI=2.70


[245-261]:
1qq9a_PU3_245-261
CI=0.32


[262-277 ]:
1qq9a_PU3_262-277
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qq9a_PU4_1-17
CI=0.00


[18-40]:
1qq9a_PU4_18-40
CI=2.01


[41-163]:
1qq9a_PU4_41-163
CI=4.32


[164-221]:
1qq9a_PU4_164-221
CI=2.81


[222-244]:
1qq9a_PU4_222-244
CI=2.70


[245-261]:
1qq9a_PU4_245-261
CI=0.32


[262-277 ]:
1qq9a_PU4_262-277
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qq9a_PU5_1-17
CI=0.00


[18-40]:
1qq9a_PU5_18-40
CI=2.01


[41-70]:
1qq9a_PU5_41-70
CI=2.77


[71-163]:
1qq9a_PU5_71-163
CI=3.78


[164-221]:
1qq9a_PU5_164-221
CI=2.81


[222-244]:
1qq9a_PU5_222-244
CI=2.70


[245-261]:
1qq9a_PU5_245-261
CI=0.32


[262-277 ]:
1qq9a_PU5_262-277
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qq9a_PU6_1-17
CI=0.00


[18-40]:
1qq9a_PU6_18-40
CI=2.01


[41-70]:
1qq9a_PU6_41-70
CI=2.77


[71-102]:
1qq9a_PU6_71-102
CI=1.36


[103-118]:
1qq9a_PU6_103-118
CI=0.00


[119-163]:
1qq9a_PU6_119-163
CI=0.46


[164-221]:
1qq9a_PU6_164-221
CI=2.81


[222-244]:
1qq9a_PU6_222-244
CI=2.70


[245-261]:
1qq9a_PU6_245-261
CI=0.32


[262-277 ]:
1qq9a_PU6_262-277
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qq9a_PU7_1-17
CI=0.00


[18-40]:
1qq9a_PU7_18-40
CI=2.01


[41-70]:
1qq9a_PU7_41-70
CI=2.77


[71-102]:
1qq9a_PU7_71-102
CI=1.36


[103-118]:
1qq9a_PU7_103-118
CI=0.00


[119-144]:
1qq9a_PU7_119-144
CI=0.65


[145-163]:
1qq9a_PU7_145-163
CI=0.00


[164-221]:
1qq9a_PU7_164-221
CI=2.81


[222-244]:
1qq9a_PU7_222-244
CI=2.70


[245-261]:
1qq9a_PU7_245-261
CI=0.32


[262-277 ]:
1qq9a_PU7_262-277
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qq9a_PU_1-17
CI=0.00


[18-40]:
1qq9a_PU_18-40
CI=2.01


[41-70]:
1qq9a_PU_41-70
CI=2.77


[71-102]:
1qq9a_PU_71-102
CI=1.36


[103-118]:
1qq9a_PU_103-118
CI=0.00


[119-144]:
1qq9a_PU_119-144
CI=0.65


[145-163]:
1qq9a_PU_145-163
CI=0.00


[164-179]:
1qq9a_PU_164-179
CI=0.35


[180-195]:
1qq9a_PU_180-195
CI=0.45


[196-221]:
1qq9a_PU_196-221
CI=0.93


[222-244]:
1qq9a_PU_222-244
CI=2.70


[245-261]:
1qq9a_PU_245-261
CI=0.32


[262-277 ]:
1qq9a_PU_262-277
CI=0.00